DNA Damage Atlas

SRX8461075-INDUCE-seq_HEK293_EMX1_RNP_7h_r2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914552


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

7hrs


Targeted break:   

EMX1; gRNA sequence: GAGTCCGAGCAGAAGAAGAANGG


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Others:   

position: chr2:73160982-73161001; intensity: 2540.24285


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.080836


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM34357146212.106-
chr273160625731615267316099755.65+
chr545358620453596444535906719.1532-
chr19_gl000208_random1059318515.2117+
rDNA13336144561353612.3342-
rDNA63296706654612.2142-
chrUn_gl00022603232009.50413-
rDNA7253760674069.17955+
rDNA2806028757282606.85122-
chrUn_gl0002251315791319111317806.67802-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM34356146196.826-
chr273160714731615267316099755.5714+
chr545358745453593574535906732.8933-
chr19_gl000208_random1050618517.9761+
chrUn_gl000226022720016.2844-
rDNA63426705654610.8935-
rDNA2820028757282607.77584-
chr154410956344109974441097627.4259+
rDNA7253759574067.01049+
chrUn_gl0002251315791319091317806.89287-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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