DNA Damage Atlas

SRX8461076-INDUCE-seq_HEK293_negative_control_7h_r1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914551


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

7hrs


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.048167


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM34357146224.538-
rDNA13346144591372914.244+
rDNA72517611739414.012+
chrUn_gl000226031920212.801-
chr19_gl000208_random461017512.6841-
rDNA6346670465009.39353+
chr68638830486388554863883047.68659+
chr17_gl000205_random8437386456846276.80372+
chr7_gl000195_random3031933198331986.59127-
rDNA2833928744284916.52412+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM34355146189.38-
chr19_gl000208_random458017514.4361-
rDNA13346143471372913.0357+
chrUn_gl000226031920212.4907-
rDNA7251760873949.78588+
rDNA6346670465008.15016+
rDNA2833928744284918.05905+
chr7_gl000195_random3031933198331985.74949-
chr9_gl000199_random5698357427573035.68841-
chrUn_gl0002243736407238254.86754-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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