DNA Damage Atlas

SRX8461077-INDUCE-seq_HEK293_negative_control_7h_r2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914550


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

7hrs


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.045145


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM04355235154.108-
chr19_gl000208_random058018415.8346-
chrUn_gl000226033620011.5642-
rDNA13336143471371810.1323+
rDNA6330670465466.61131-
rDNA2807628769285605.86173+
chr9_gl000199_random5696757430573045.72191-
rDNA7245760874705.35201-
chr193660589836606617366059184.91284+
chr51389058221389061131389059044.85543+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM34355235189.38-
chr19_gl000208_random458018414.4361-
rDNA13346143471371813.0357+
chrUn_gl000226031920012.4907-
rDNA7251760874709.78588-
rDNA6346670465468.15016-
rDNA2833928744285608.05905+
chr7_gl000195_random3031933198305435.74949-
chr9_gl000199_random5698357427573045.68841-
chrUn_gl0002243736407238704.86754+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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