DNA Damage Atlas

SRX8461078-INDUCE-seq_DivA_induced_r1

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR11914549


Source Project ID:   

PRJNA636949

Cell Type:   

DiVA


Organism:   

Homo sapiens


Treatment:   

4-Hydroxytamoxifen


Treatment Time:   

4hrs


Treatment Dose:   

300nM


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.711217


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr175718429857184301/12140.4/
chr39953696699536969/10370/
chr178025084280250845/10117/
chr26838475068384753/8978.86/
chr1110036701110036704/8093.62/
chr176185085761850860/7081.92/
chr181932080619320809/6955.46/
chr18945859889458601/6576.07/
chr28582259585822598/6449.61/
chr9130693172130693175/6323.14/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr175718429857184301/13583.6/
chr178025084280250845/10402.2/
chr18945859889458601/8638.29/
chr39953696699536969/7770.03/
chr9130693172130693175/7322.81/
chr26838475068384753/7059.06/
chr204208711942087122/6904.62/
chr1110036701110036704/6665.5/
chr176185085761850860/6460.31/
chr181932080619320809/5974.19/
Download the Full Merged Peak List


Visualization

Manual





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