DNA Damage Atlas

SRX8461079-INDUCE-seq_HEK293_EMX1_RNP_12h_r1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914548


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

12hrs


Targeted break:   

EMX1; gRNA sequence: GAGTCCGAGCAGAAGAAGAANGG


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Others:   

position: chr2:73160982-73161001; intensity: 1403.62205


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.06048


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM04353168247.881-
chr273160782731611997316099765.0859+
chr545358856453592924535906735.1846-
chr19_gl000208_random1658518516.1762-
rDNA1334614458135469.76289-
chrUn_gl00022623242028.06236-
rDNA7253760974667.29236-
chr9_gl000199_random5698757431573085.84703-
chr132573267025733010257326705.55311+
chr61488221571488224741488223575.21152-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM04353168249.132-
chr273160782731611997316099775.2276+
chr545358856453592924535906738.685-
chr19_gl000208_random1658518515.5611-
chrUn_gl000226232420210.4803-
rDNA1348314456135469.33911-
rDNA6358670464637.53171+
rDNA7270760274666.59041-
chr9_gl000199_random5698757431573085.59612-
chr17_gl000205_random8456288129862624.89837+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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