DNA Damage Atlas

SRX8461080-INDUCE-seq_HEK293_EMX1_RNP_12h_r2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914547


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

12hrs


Targeted break:   

EMX1; gRNA sequence: GAGTCCGAGCAGAAGAAGAANGG


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Others:   

position: chr2:73160982-73161001; intensity: 1779.95063


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.046079


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM04357235250.336-
chr273160732731612137316099774.4216+
chr545358855453595674535906726.1104-
chr19_gl000208_random36099214.6861-
rDNA6339670465419.75315-
chrUn_gl00022604292009.68116-
rDNA1348314456134837.52063+
chrUn_gl0002251313791319031317805.66142-
chr111834321818343675183435865.62591-
rDNA7270760273755.3613+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM04353235249.132-
chr273160782731611997316099775.2276+
chr545358856453592924535906738.685-
chr19_gl000208_random165859215.5611-
chrUn_gl000226232420010.4803-
rDNA1348314456134839.33911+
rDNA6358670465417.53171-
rDNA7270760273756.59041+
chr9_gl000199_random5698757431573415.59612-
chr17_gl000205_random8456288129868504.89837-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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