DNA Damage Atlas

SRX8461081-INDUCE-seq_HEK293_negative_control_12h_r1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914546


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

12hrs


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.035777


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM14474235157.86-
chrUn_gl000226034020215.9516-
chr19_gl000208_random1783718811.8291+
chr9_gl000199_random5697557432573077.30323-
rDNA1333814458137996.33245-
chrUn_gl0002281170841174311173086.31206-
chrUn_gl0002251315791320221317805.88596-
rDNA6335670764735.04674+
chr7_gl000195_random2978534222306933.76107+
chrUn_gl0002206475840269243.73464-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM54357235161.998-
chrUn_gl000226032920216.1867-
chr19_gl000208_random1781918813.2866+
chrUn_gl00022513158013178013178011.0731-
rDNA1334614455137997.34225-
rDNA6342670664736.29278+
chr9_gl000199_random5697557431573075.43841-
chr7_gl000195_random3035433631306934.39924+
chr17_gl000205_random8374288042851604.04628-
chr194142665341427356414271113.95977-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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