DNA Damage Atlas

SRX8461082-INDUCE-seq_HEK293_negative_control_12h_r2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914545


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

12hrs


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.061538


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM54357235161.82-
chrUn_gl000226032920215.8884-
chr19_gl000208_random98195114.4646+
chrUn_gl00022513158013178013178011.7163-
rDNA1334614455137198.28925+
rDNA6342670664957.42791+
rDNA2836628760285576.40485+
chr12327911382327914302327914204.93837-
chr7_gl000195_random3035433631313574.5654+
chr193357177633572333335718014.53054+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM54357235161.998-
chrUn_gl000226032920216.1867-
chr19_gl000208_random178195113.2866+
chrUn_gl00022513158013178013178011.0731-
rDNA1334614455137197.34225+
rDNA6342670664956.29278+
chr9_gl000199_random5697557431572315.43841+
rDNA2836628750285575.18711+
chr7_gl000195_random3035433631313574.39924+
chrUn_gl0002207136840272384.27768+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab