DNA Damage Atlas

SRX8461083-INDUCE-seq_HEK293_EMX1_RNP_24h_r1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914544


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

24hrs


Targeted break:   

position: chr2:73160982-73161001


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Others:   

position: chr2:73160982-73161001; intensity: 1443.29374


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.062678


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM04356191566.412-
chr273160775731611987316099768.3331+
chr545358851453593854535906730.5343-
rDNA13588144581368818.7417+
chr635039953350401963504018515.25-
chr19_gl000208_random124507815.2291+
chr614136825414136850814136845414.5896-
chr1089483921894841838948392114.1441+
chr795162446951627089516245914.1441+
chr1939902669399029933990266913.725+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM04356191594.392-
chr273160775731611987316099768.7375+
chr545358851453593854535906733.369-
rDNA13588143361368823.8223+
chr19_gl000208_random124277821.176+
rDNA28390287472847411.7824+
chr9_gl000199_random57104574285730411.4524-
chrUn_gl00021240662409874077811.4172+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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