Sample Detail

Basic Information

Manual

Sample ID:

SRR11914543

Source Project ID:

PRJNA636949

Cell Type:

293

Organism:

Homo sapiens

Treatment:

RNP nucleofection

Treatment Time:

24hrs

Targeted break:

position: chr2:73160982-73161001

Layout:

SINGLE

Instrument model:

NextSeq 500

Technique:

INDUCE-seq

Others:

position: chr2:73160982-73161001; intensity: 1434.95818

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0.060204

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrM	0	4357	146	622.457	-
chr2	73160622	73161211	73160997	50.4971	+
chr19_gl000208_random	10	427	227	27.3415	+
chr5	45358495	45359487	45359067	20.4881	-
rDNA	13344	14336	13734	19.9884	+
rDNA	6342	6707	6461	19.0136	+
chr19	13842386	13842647	13842447	11.3957	+
rDNA	28390	28749	28470	11.0465	+
chr7	85118862	85119151	85118902	10.2916	+
chr5	138158702	138159016	138158722	9.47222	+

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrM	0	4356	146	594.392	-
chr2	73160775	73161198	73160997	68.7375	+
chr5	45358851	45359385	45359067	33.369	-
rDNA	13588	14336	13734	23.8223	+
chr19_gl000208_random	12	427	227	21.176	+
rDNA	28390	28747	28470	11.7824	+
chrUn_gl000212	40662	40987	40866	11.4172	-

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download