DNA Damage Atlas

SRX8461085-INDUCE-seq_HEK293_negative_control_24h_r1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914542


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

24hrs


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.066819


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM04356235738.358-
rDNA13347144581420324.1065-
chrUn_gl000226231320217.665-
chr19_gl000208_random14636515.6074+
rDNA28343287692851514.5083+
rDNA6345670264589.61803+
rDNA4058640914407928.37473-
chr157299551772995841729956097.41835+
chr121107181701107184691107183766.89024-
chr193734129637341931373412966.48876+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM04356235715.13-
rDNA13556143271420327.5872-
chr19_gl000208_random14636514.9223+
rDNA28343287692851514.4228+
rDNA40588409014079211.1427-
chr9_gl000199_random5698357311573078.48454-
rDNA4195642335419617.50965+
chr194370504643705578437050466.11419+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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