DNA Damage Atlas

SRX8461086-INDUCE-seq_HEK293_negative_control_24h_r2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914541


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

24hrs


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.043825


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM04356235691.901-
rDNA13556143271367321.3279+
rDNA40588409014078813.5093-
chrUn_gl00021240656409984074410.99+
chr19_gl000208_random06775510.4097+
chr159353575193536038935357519.8221+
chrX7052336270523660705233629.45954+
rDNA2807228769285749.43692-
chr214557081045571117455710539.18223-
chr9_gl000199_random5698357311573068.59434-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM04356235715.13-
rDNA13556143271367327.5872+
chr19_gl000208_random14635514.9223+
rDNA28343287692857414.4228-
rDNA40588409014078811.1427-
chr9_gl000199_random5698357311573068.48454-
rDNA4195642335419687.50965+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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