DNA Damage Atlas

SRX8461087-INDUCE-seq_HEK293_EMX1_RNP_30h_r1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914540


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

30hrs


Targeted break:   

EMX1; gRNA sequence: GAGTCCGAGCAGAAGAAGAANGG


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Others:   

position: chr2:73160982-73161001; intensity: 772.29334


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.116667


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM14356236574.561-
chr273160772731612147316099735.688+
chr545358793453592814535906721.7999-
rDNA13341144511379519.8292-
chr19_gl000208_random204662016.4502+
chrUn_gl000226223919415.4785-
rDNA72527608739014.4263+
rDNA28181287572818112.1006+
rDNA41952423164197010.078+
chr12320023222320025732320023738.76907+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM24355236620.753-
chr273160777731611987316099732.2506+
chr545358859453592814535906724.8633-
rDNA13346143501379523.8426-
chr19_gl000208_random204662014.6045+
rDNA72637608739011.1918+
rDNA4196842316419708.36526+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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