DNA Damage Atlas

SRX8461088-INDUCE-seq_HEK293_EMX1_RNP_30h_r2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914539


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

30hrs


Targeted break:   

EMX1; gRNA sequence: GAGTCCGAGCAGAAGAAGAANGG


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Others:   

position: chr2:73160982-73161001; intensity: 517.31371


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.11437


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM24355235666.934-
chr273160777731611987316099827.033-
rDNA13346143501397025.7626+
chr545358859453593764535906720.0121-
chr19_gl000208_random45501311.3695+
rDNA28187287502847811.0262+
chrX99882493998828029988253410.0449+
rDNA4196842333419689.92108+
chr71147195111472271114720719.69963+
chr194003081640031249400308709.55776+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM24355235620.753-
chr273160777731611987316099832.2506-
chr545358859453592814535906724.8633-
rDNA13346143501397023.8426+
rDNA28187287502847811.3773+
rDNA72637608737111.1918+
rDNA4196842316419688.36526+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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