DNA Damage Atlas

SRX8461090-INDUCE-seq_HEK293_negative_control_30h_r1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914537


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

30hrs


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.09784


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM14605168562.735-
chr19_gl000208_random341616024.4252-
rDNA13480144511372721.3549+
rDNA28403287332847615.2843+
chrUn_gl000226033820214.9225-
chr121973128421973151721973131714.4315+
chr2232739496327396983273949613.8718+
chr9_gl000199_random57098573425734113.7809-
chr1331726581317268343172658111.0755+
chrX75553000755532707555327010.3782-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM14356168626.173-
chr19_gl000208_random2141616023.0875-
rDNA13480144511372721.7058+
rDNA28403287332847612.5921+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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