DNA Damage Atlas

SRX8461091-INDUCE-seq_HEK293_negative_control_30h_r2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914536


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

30hrs


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.103803


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM04356168657.415-
rDNA13341144571407819.5161-
chr19_gl000208_random2159718316.3854-
rDNA4195642329419609.73188+
chr193876146138761802387614938.51611+
rDNA2836928755284768.46371+
chr9_gl000199_random5697457311573087.54004-
rDNA6369670664527.54004+
chrUn_gl0002124062240962407627.47351+
rDNA7264760774737.40815-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM14356168626.173-
chr19_gl000208_random2141618323.0875-
rDNA13480144511407821.7058-
rDNA28403287332847612.5921+
chr9_gl000199_random5709857311573089.91144-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab