DNA Damage Atlas

SRX8461100-INDUCE-seq_DivA_induced_r3

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR11914527


Source Project ID:   

PRJNA636949

Cell Type:   

DiVA


Organism:   

Homo sapiens


Treatment:   

4-Hydroxytamoxifen


Treatment Time:   

4hrs


Treatment Dose:   

300nM


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.75959


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr175718429857184301/12691/
chr178025084280250845/9820.43/
chr18945859889458601/7856.34/
chr9130693172130693175/6798.76/
chr204208711942087122/6496.59/
chr39953696699536969/6496.59/
chr176185085761850860/5590.09/
chr5142785051142785054/5590.09/
chr181932080619320809/5439.01/
chr1110036701110036704/5287.92/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr175718429857184301/13583.6/
chr178025084280250845/10402.2/
chr18945859889458601/8638.29/
chr39953696699536969/7770.03/
chr9130693172130693175/7322.81/
chr26838475068384753/7059.06/
chr204208711942087122/6904.62/
chr1110036701110036704/6665.5/
chr176185085761850860/6460.31/
chr181932080619320809/5974.19/
Download the Full Merged Peak List


Visualization

Manual





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