DNA Damage Atlas

SRX8461117-INDUCE-seq_HEK293_untreated_r1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914510


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.075275


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM04357168334.144-
rDNA13347144671420915.6201-
rDNA72457609738712.6709+
chr19_gl000208_random777818512.3768-
chrUn_gl000226034120211.1935-
rDNA63416706648910.4575+
chrUn_gl0002201187081190511188476.95516+
rDNA2817928769285106.73904+
chr7_gl000195_random3019233743320506.44944-
chr17_gl000205_random8296388117855826.10986+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM04357168388.79-
chr19_gl000208_random745418520.7083-
rDNA13347144571420912.7858-
chrUn_gl000226032320211.1046-
rDNA63426702648910.145+
rDNA2820028757285106.82488+
chrUn_gl0002251315791319111317806.72723-
chr7_gl000195_random3044833370320506.28779-
chr9_gl000199_random5697557433571765.42632-
chr11492235671492240871492239554.40864+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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