DNA Damage Atlas

SRX8461118-INDUCE-seq_HEK293_untreated_r2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914509


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.103791


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM04357300301.581-
rDNA13337144591368016.9608+
rDNA72447612739914.1033+
chrUn_gl000226036120213.531-
chr19_gl000208_random66845113.2084+
rDNA63396708650212.6861+
chr7_gl000195_random3017733885306567.35516-
rDNA2806828757285537.23726-
chrUn_gl0002251315791319111317805.82389-
rDNA4057940925407794.41177-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM04357300388.79-
chr19_gl000208_random74545120.7083+
rDNA13347144571368012.7858+
chrUn_gl000226032320211.1046-
rDNA63426702650210.145+
rDNA2820028757285536.82488-
chrUn_gl0002251315791319111317806.72723-
chr7_gl000195_random3044833370306566.28779-
rDNA4195242315419645.9091+
chr9_gl000199_random5697557433571765.42632-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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