DNA Damage Atlas

SRX8786118-NickSeq_hg19_highMapQ

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12282736


Source Project ID:   

PRJNA643848

Organism:   

Homo sapiens


Treatment:   

spCas9 nickase


Genotype:   

siAAVS1 + siVEGFA


Layout:   

PAIRED


Instrument model:   

Illumina MiniSeq


Technique:   

DENT-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220121612121903121743111.758/
rDNA169251727317115107.417/
chrUn_gl00022014489614554214529286.1036/
rDNA40443410934083184.6536/
chrUn_gl00022011775311807111788673.1163/
rDNA12289127081247862.9856/
chrM15630161701603238.2117/
chrM17332052180233.514/
chrUn_gl00022435464131375223.6427/
chr9_gl000199_random91755920559185213.9556/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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