DNA Damage Atlas

SRX9684446-GM13069_DSBC_500ng_N1_1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13253237


Source Project ID:   

SRP297925

Cell Type:   

GM13069


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

illumina HiSeq X Ten


Technique:   

DSBCapture


Others:   

500ng gDNA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 1.611702


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12167176041384778.4735-
chrUn_gl00021680521817088073164.5198-
rDNA62957452638662.8913+
rDNA693242175359.047-
chrUn_gl00022012853813090012955953.7701-
chrUn_gl00022011767312211212082545.7779+
rDNA17879212431853043.0341+
chrUn_gl00021675153764227602641.0866-
chrUn_gl00022014131814667514483135.8297-
chrUn_gl0002169743606155233.1611-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021680521810688073182.193-
chrUn_gl00021613432107155256.3815-
rDNA12345173511384746.6917-
chrUn_gl00022012888013072712955941.5868-
chrUn_gl00021614506114560614544640.7611-
chrUn_gl00021240452413654045636.9013+
chr9_gl000199_random34264346933437236.1444+
rDNA63277253638634.8339+
rDNA2012524175333.7204-
chrUn_gl00022011874212203912082533.69+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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