DNA Damage Atlas

SRX9684447-GM13069_DSBC_500ng_N1_2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13253236


Source Project ID:   

SRP297925

Cell Type:   

GM13069


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

illumina HiSeq X Ten


Technique:   

DSBCapture


Others:   

500ng gDNA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.100331


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021614506114561114544643.7975-
chrUn_gl00022012888013081712970637.0881-
chrUn_gl00021680223810688073136.3279-
rDNA12345174691691034.9049-
chrUn_gl00021240452419214045234.102+
chr9_gl000199_random34264346933439033.7898+
chrUn_gl00021613432107155231.5296-
chrUn_gl00022011874212214612082527.3669+
chrUn_gl00022811620111959411733427.33-
chr9_gl000199_random72240732807283226.6467+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021680521810688073182.193-
chrUn_gl00021613432107155256.3815-
rDNA12345173511691046.6917-
chrUn_gl00022012888013072712970641.5868-
chrUn_gl00021614506114560614544640.7611-
chrUn_gl00021240452413654045236.9013+
chr9_gl000199_random34264346933439036.1444+
rDNA63277253666434.8339-
rDNA201252454033.7204+
chrUn_gl00022011874212203912082533.69+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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