DNA Damage Atlas

SRX9684448-GM13069_DSBC_500ng_N1_3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13253235


Source Project ID:   

SRP297925

Cell Type:   

GM13069


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

illumina HiSeq X Ten


Technique:   

DSBCapture


Others:   

500ng gDNA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.329924


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021240451415394141138.6236-
rDNA12166173511384632.0612-
chrUn_gl00021614471614560614511631.9821+
chrUn_gl00021612392374155230.7175-
chrUn_gl00021680172817418073126.0852-
chrUn_gl00022811619711966011828526.0203+
chrUn_gl00021675353765117602625.0167-
chrUn_gl00022012841913072712955924.6291-
rDNA63197382666021.3108-
rDNA201256354120.6077+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021680521810688073182.193-
chrUn_gl00021613432107155256.3815-
rDNA12345173511384646.6917-
chrUn_gl00022012888013072712955941.5868-
chrUn_gl00021614506114560614511640.7611+
chr9_gl000199_random34264346933440836.1444+
rDNA63277253666034.8339-
rDNA201252454133.7204+
chrUn_gl00022011874212203912001133.69-
chrUn_gl00021675353764087602630.6175-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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