DNA Damage Atlas

SRX9684449-GM13069_DSBC_2ug_N1T1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13253234


Source Project ID:   

SRP297925

Cell Type:   

GM13069


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

illumina HiSeq X Ten


Technique:   

DSBCapture


Others:   

2ug gDNA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.593003


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA123245186466.0758-
rDNA12019174201384762.061-
chr9_gl000199_random71942736217301844.8195-
chr9_gl000199_random33768350953452338.7852-
chrUn_gl00022012854413100512955932.1429-
chrUn_gl00022011750612212011988029.1964+
chrUn_gl00021679164817358073128.7265-
rDNA76198578778623.0437+
chrUn_gl00021614469214569414544620.277-
chrUn_gl00022626887948701820.192-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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