DNA Damage Atlas

SRX9684450-HeLa_DSBC_2ug_N1T1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13253233


Source Project ID:   

SRP297925

Cell Type:   

HeLa


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Others:   

2ug gDNA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.023401


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA27899289942855744.5229+
chr9_gl000199_random72471733407283242.5271+
chr9_gl000199_random33849353263440828.3326+
chr9_gl000199_random56769576165703025.7035+
chrUn_gl0002260127020018.7031-
rDNA39907425714210517.4965+
rDNA31095327843128716.3536+
rDNA13333155021481216.095+
chrUn_gl00022014257714336114319115.4136-
chrUn_gl00022013146313222013180815.2876+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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