DNA Damage Atlas


GSM3714872-END_seq_PB_LIG4_1h_TIME_COURSE




Basic Information

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Sample ID:   

SRR8870066


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

1hr


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

15.8955


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714883-END_seq_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.006086



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr214717728814717914614717792879.7149+
chr195807476958079709580747847.0902+
chr971959424719607537196026843.7791+
chr1010577409310577488510577464141.5938-
chr514514047914514130614514094341.4067-
chrX11628716711628757611628716940.9716+
chr116636004216636086916636043540.7145+
chr499234662992360389923515336.3459-
chr358654746586558965865539236.1576+
chr563766562637674256376696936.1216-
Download the Full Peak List



Motif Analysis

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