Technique

DNA Damage Atlas

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Total Page: 4 Total entries: 69

Technique	Publication	Journal	Targets	Class
INDUCE-seq	Precision digital mapping of endogenous and induced genomic DNA breaks by INDUCE-seq	Nature Communications	DSB	DNA damage
S1-seq	A global view of meiotic double-strand break end resection	Science	DSB	DNA damage
DSBCapture	DSBCapture: in situ capture and sequencing of DNA breaks	Nature Methods	DSB	DNA damage
qDSB-seq	qDSB-Seq is a general method for genome-wide quantification of DNA double-strand breaks using sequencing	Nature Communications	DSB	DNA damage
BLISS	BLISS is a versatile and quantitative method for genome-wide profiling of DNA double-strand breaks	Nature Communications	DSB	DNA damage
sBLISS	Genome-wide detection of DNA double-strand breaks by in-suspension BLISS	Nature Protocols	DSB	DNA damage
Ribose-seq	Ribose-seq: global mapping of ribonucleotides embedded in genomic DNA	Nature Methods	Ribonucleotide	DNA damage
HydEn-seq	Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation	Nature Structural & Molecular Biology	Ribonucleotide	DNA damage
Excision-seq	High resolution mapping of modified DNA nucleobases using excision repair enzymes	Genome Research	dU	DNA damage
NMP-seq	Genome-wide maps of alkylation damage, repair, and mutagenesis in yeast reveal mechanisms of mutational heterogeneity	Genome Research	alkylation	DNA damage
CPD-seq	Chromosomal landscape of UV damage formation and repair at single-nucleotide resolution	PNAS	bulky DNA adducts	DNA damage
Nick-seq	Nick-seq for single-nucleotide resolution genomic maps of DNA modifications and damage	Nucleic Acids Research	SSB	DNA damage
Click-Code-Seq	Nucleotide-resolution genome-wide mapping of oxidative DNA damage by click-code-seq	Journal of American Chemical Society	8-oxodG	DNA damage
Circle-damage-seq	The major mechanism of melanoma mutations is based on deamination of cytosine in pyrimidine dimers as determined by circle damage sequencing	Science Advance	bulky DNA adducts	DNA damage
EdU-seq	Role of 53BP1 in end protection and DNA synthesis at DNA breaks	Genes & Development	DNA repair synthesis	DNA damage
dU-seq	Genome-wide mapping reveals that deoxyuridine is enriched in the human centromeric DNA	Nature Chemical Biology	dU	DNA damage
AP-seq	Genomic landscape of oxidative DNA damage and repair reveals regioselective protection from mutagenesis	Genome Biology	AP site	DNA damage
OGAP-seq	A mechanism for oxidative damage repair at gene regulatory elements	Nature	AP site	DNA damage
OGG1-AP-seq	Genomic landscape of oxidative DNA damage and repair reveals regioselective protection from mutagenesis	Genome Biology	8-oxodG	DNA damage
UPD-seq	Genome-wide mapping of regions preferentially targeted by the human DNA-cytosine deaminase APOBEC3A using uracil-DNA pulldown and sequencing	Journal of Biological Chemistry	AP site	DNA damage

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