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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
GSE100352
PMID:
29109257
Technique Type:
HydEn-seq
Publication:
Ribonucleotides incorporated by the yeast mitochondrial DNA polymerase are not repaired
First Author:
Paulina H Wanrooij
Last Author:
Andrei Chabes
Year:
2017
Journal:
PANS
Access Link:
Samples ( 49 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| GSM2679370-150313_ACH01-150202_KOH | / | Saccharomyces cerevisiae | KOH | WT | / | / | / | HydEn-seq | |
| GSM2679371-150313_ACH02-150202_KOH | / | Saccharomyces cerevisiae | KOH | WT | / | / | / | HydEn-seq | |
| GSM2679372-150313_ACH09-150202_KOH | / | Saccharomyces cerevisiae | KOH | Y285F | / | / | / | HydEn-seq | |
| GSM2679373-150313_ACH10-150202_KOH | / | Saccharomyces cerevisiae | KOH | Y285F | / | / | / | HydEn-seq | |
| GSM2679374-150313_ACH11-150202_KOH | / | Saccharomyces cerevisiae | KOH | Q288E | / | / | / | HydEn-seq | |
| GSM2679375-150313_ACH14-150202_KOH | / | Saccharomyces cerevisiae | KOH | D57N Q288E | / | / | / | HydEn-seq | |
| GSM2679376-150313_ACH15-150202_KOH | / | Saccharomyces cerevisiae | KOH | D57N | / | / | / | HydEn-seq | |
| GSM2679377-160204_ARC107-PW157d-KOH | / | Saccharomyces cerevisiae | KOH | rnh Y285A | / | / | / | HydEn-seq | |
| GSM2679378-160204_ARC108-PW156h-KOH | / | Saccharomyces cerevisiae | KOH | rnh Y285A | / | / | / | HydEn-seq | |
| GSM2679379-160204_ARC109-PW164b-KOH | / | Saccharomyces cerevisiae | KOH | rnh Y285F | / | / | / | HydEn-seq | |
| GSM2679380-160204_ARC110-PW165h-KOH | / | Saccharomyces cerevisiae | KOH | rnh Y285F | / | / | / | HydEn-seq | |
| GSM2679381-160204_ARC111-PW172b-KOH | / | Saccharomyces cerevisiae | KOH | rnh D57N Q288E | / | / | / | HydEn-seq | |
| GSM2679382-160204_ARC112-PW174b-KOH | / | Saccharomyces cerevisiae | KOH | rnh D57N Q288E | / | / | / | HydEn-seq | |
| GSM2679383-160204_ARC115-PW193c-KOH | / | Saccharomyces cerevisiae | KOH | rnh Q288E | / | / | / | HydEn-seq | |
| GSM2679384-160204_ARC116-PW194a-KOH | / | Saccharomyces cerevisiae | KOH | rnh Q288E | / | / | / | HydEn-seq | |
| GSM2679385-160204_ARC117-PW203b-KOH | / | Saccharomyces cerevisiae | KOH | rnh D57N TRP | / | / | / | HydEn-seq | |
| GSM2679386-160204_ARC118-PW204a-KOH | / | Saccharomyces cerevisiae | KOH | rnh D57N TRP | / | / | / | HydEn-seq | |
| GSM2679387-160204_ARC119-PW215b-KOH | / | Saccharomyces cerevisiae | KOH | rnh D57N TRP sml1D crt1D | / | / | / | HydEn-seq | |
| GSM2679388-160204_ARC120-PW218c-KOH | / | Saccharomyces cerevisiae | KOH | rnh D57N TRP sml1D crt1D | / | / | / | HydEn-seq | |
| GSM2679389-160524_PW123d_KOH | / | Saccharomyces cerevisiae | KOH | rnh | / | / | / | HydEn-seq | |
| GSM2679390-160524_PW123h_KOH | / | Saccharomyces cerevisiae | KOH | rnh | / | / | / | HydEn-seq | |
| GSM2679391-160615_ACP12-Q288E-KOH-160310 | / | Saccharomyces cerevisiae | KOH | Q288E | / | / | / | HydEn-seq | |
| GSM2679392-160615_ACP16-D57N-crt-sml1-KOH-160310 | / | Saccharomyces cerevisiae | KOH | D57N TRP sml1D crt1D | / | / | / | HydEn-seq | |
| GSM2679393-160615_ACP17-D57N-crt-sml1-KOH-160310 | / | Saccharomyces cerevisiae | KOH | D57N TRP sml1D crt1D | / | / | / | HydEn-seq | |
| GSM2679394-160615_ACP18-D57N-KOH-160310 | / | Saccharomyces cerevisiae | KOH | D57N TRP | / | / | / | HydEn-seq | |
| GSM2679395-160615_ACP20-D57N-Q288E-KOH-160310 | / | Saccharomyces cerevisiae | KOH | D57N Q288E | / | / | / | HydEn-seq | |
| GSM2679396-160912_AC402-PmeI-500ng-KOH | / | Saccharomyces cerevisiae | KOH | WT AC402 | / | / | / | HydEn-seq | |
| GSM2679397-160912_DK10c-KOH | / | Saccharomyces cerevisiae | KOH | Q288A | / | / | / | HydEn-seq | |
| GSM2679398-160912_DK10ex-KOH | / | Saccharomyces cerevisiae | KOH | Q288A | / | / | / | HydEn-seq | |
| GSM2679399-160912_JAK17-4ix1-KOH | / | Saccharomyces cerevisiae | KOH | Y285A Q288E | / | / | / | HydEn-seq | |
| GSM2679400-160912_PW13-3cx-KOH | / | Saccharomyces cerevisiae | KOH | rnh Q288A | / | / | / | HydEn-seq | |
| GSM2679401-160912_PW13-6dx-KOH | / | Saccharomyces cerevisiae | KOH | rnh Q288A | / | / | / | HydEn-seq | |
| GSM2679402-160912_PW18-5fx1-KOH | / | Saccharomyces cerevisiae | KOH | rnh Y285A Q288E | / | / | / | HydEn-seq | |
| GSM2679403-161130-Cut-AC402-1-i1_KOH | / | Saccharomyces cerevisiae | KOH | WT | / | / | digest: PmeI | HydEn-seq | |
| GSM2679404-161130-Cut-AC402-2-i2_KOH | / | Saccharomyces cerevisiae | KOH | WT | / | / | digest: PmeI | HydEn-seq | |
| GSM2679405-161130-Cut-PW10-7f1-i9_KOH | / | Saccharomyces cerevisiae | KOH | D57N TRP sml1D crt1D | / | / | digest: PmeI | HydEn-seq | |
| GSM2679406-161130-Cut-PW10-7f2-i10_KOH | / | Saccharomyces cerevisiae | KOH | D57N TRP sml1D crt1D | / | / | digest: PmeI | HydEn-seq | |
| GSM2679407-161130-Cut-PW12-3c-i3_KOH | / | Saccharomyces cerevisiae | KOH | rnh | / | / | digest: PmeI | HydEn-seq | |
| GSM2679408-161130-Cut-PW12-3f-i4_KOH | / | Saccharomyces cerevisiae | KOH | rnh | / | / | digest: PmeI | HydEn-seq | |
| GSM2679409-161130-Cut-PW21-5b-i11_KOH | / | Saccharomyces cerevisiae | KOH | rnh D57N TRP sml1D crt1D | / | / | digest: PmeI | HydEn-seq | |
| GSM2679410-161130-Cut-PW21-8c-i12_KOH | / | Saccharomyces cerevisiae | KOH | rnh D57N TRP sml1D crt1D | / | / | digest: PmeI | HydEn-seq | |
| GSM2679411-161130-JAK17-4i-i13_KOH | / | Saccharomyces cerevisiae | KOH | Y285A Q288E | / | / | / | HydEn-seq | |
| GSM2679412-161130-PW12-3cx-i20_KOH | / | Saccharomyces cerevisiae | KOH | rnh | / | / | / | HydEn-seq | |
| GSM2679413-161130-PW12-3fx-i21_KOH | / | Saccharomyces cerevisiae | KOH | rnh | / | / | / | HydEn-seq | |
| GSM2679414-161130-PW18-5f-i14_KOH | / | Saccharomyces cerevisiae | KOH | rnh Y285A Q288E | / | / | / | HydEn-seq | |
| GSM2679415-161130-wt-AC402-i15_KOH | / | Saccharomyces cerevisiae | KOH | WT | / | / | / | HydEn-seq | |
| GSM2679416-161130-wt-AC403-i16_KOH | / | Saccharomyces cerevisiae | KOH | WT | / | / | / | HydEn-seq | |
| GSM2679417-161130-Y285A-DK8a-i18_KOH | / | Saccharomyces cerevisiae | KOH | Y285A | / | / | / | HydEn-seq | |
| GSM2679418-161130-Y285A-DK8e-i19_KOH | / | Saccharomyces cerevisiae | KOH | Y285A | / | / | / | HydEn-seq |
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