DNA Damage Atlas



Basic Information

Dataset ID:

  GSE181667


PMID:

  34503990


Technique Type:

  SAR-seq


Publication:

  Role of 53BP1 in end protection and DNA synthesis at DNA breaks


First Author:

  Jacob Paiano


Last Author:

  André Nussenzweig


Year:

  2021


Journal:

  Genes & Development


Access Link:   

Samples ( 42 )

  Sample Name    Cell Line/Tissue    Organism    Treatment    Genotype    In-situ Treatment    Cell Phase    Bait/Targeted Break    Technique    fastqc  
GSM5508935-PreB-WT-18hrs-AsisI-SARseqAbel pre-B cellMus musculusNTWT//AsiSISAR-seq
GSM5508936-PreB-Lig4-18hrs-AsisI-SARseqAbel pre-B cellMus musculusNTLig4-/-//AsiSISAR-seq
GSM5508937-PreB-Lig4-18hrs-AsisI-SARseq_strandnessAbel pre-B cellMus musculusNTLig4-/-//AsiSISAR-seq
GSM5508938-PreB-Lig4-12hrs-AsiSI-SARseq-controlAbel pre-B cellMus musculusNTLig4-/-//AsiSISAR-seq
GSM5508939-PreB-Lig4-12hrs-AsiSI-SARseq-APHAbel pre-B cellMus musculusAphidicolinLig4-/-//AsiSISAR-seq
GSM5508940-PreB-Lig4-12hrs-AsiSI-SARseq-POLAiAbel pre-B cellMus musculusPOLA inhibitorLig4-/-//AsiSISAR-seq
GSM5508941-PreB-Lig4-12hrs-AsiSI-SARseq-control-rep2Abel pre-B cellMus musculusNTLig4-/-//AsiSISAR-seq
GSM5508942-PreB-Lig4-12hrs-AsiSI-SARseq-APH-rep2Abel pre-B cellMus musculusAphidicolinLig4-/-//AsiSISAR-seq
GSM5508943-PreB-Lig4-12hrs-AsiSI-SARseq-POLAi-rep2Abel pre-B cellMus musculusPOLA inhibitorLig4-/-//AsiSISAR-seq
GSM5508944-PreB-Lig4-18hrs-AsisI-SARseq-HUAbel pre-B cellMus musculusHydroxyureaLig4-/-//AsiSISAR-seq
GSM5508945-PreB-Lig4-18hrs-AsisI-SARseq-control-for-HUAbel pre-B cellMus musculusNTLig4-/-//AsiSISAR-seq
GSM5508946-PreB-Lig4-18hrs-AsisI-SARseq-DMSOAbel pre-B cellMus musculusDMSOLig4-/-//AsiSISAR-seq
GSM5508947-PreB-Lig4-18hrs-AsisI-SARseq-50uM-APHAbel pre-B cellMus musculusAphidicolinLig4-/-//AsiSISAR-seq
GSM5508948-PreB-Lig4-18hrs-AsisI-SARseq-5uM-APHAbel pre-B cellMus musculusAphidicolinLig4-/-//AsiSISAR-seq
GSM5508964-PreB-Lig4-53BP1-18hrs-AsisI-SARseq-clone1-APHAbel pre-B cellMus musculusAphidicolinLig4-/-53BP1-/-//AsiSISAR-seq
GSM5508965-PreB-Lig4-53BP1-18hrs-AsisI-SARseq-clone1-contrl-for-APH-POLAiAbel pre-B cellMus musculusNTLig4-/-53BP1-/-//AsiSISAR-seq
GSM5508966-PreB-Lig4-53BP1-18hrs-AsisI-SARseq-clone1-POLAiAbel pre-B cellMus musculusPOLA inhibitorLig4-/-53BP1-/-//AsiSISAR-seq
GSM5508967-PreB-Lig4-53BP1-18hrs-AsisI-SARseq-clone2-contrl-for-APH-POLAiAbel pre-B cellMus musculusNTLig4-/-53BP1-/-//AsiSISAR-seq
GSM5508968-PreB-Lig4-53BP1-18hrs-AsisI-SARseq-clone2-APHAbel pre-B cellMus musculusAphidicolinLig4-/-53BP1-/-//AsiSISAR-seq
GSM5508969-PreB-Lig4-53BP1-18hrs-AsisI-SARseq-clone2-POLAiAbel pre-B cellMus musculusPOLA inhibitorLig4-/-53BP1-/-//AsiSISAR-seq
GSM5508970-PreB-Lig4-Rev1-18hrs-AsisI-SARseq-contrl-for-APH-POLAiAbel pre-B cellMus musculusNTLig4-/-Rev7-/-//AsiSISAR-seq
GSM5508971-PreB-Lig4-Rev1-18hrs-AsisI-SARseq-APHAbel pre-B cellMus musculusAphidicolinLig4-/-Rev7-/-//AsiSISAR-seq
GSM5508972-PreB-Lig4-Rev1-18hrs-AsisI-SARseq-POLAiAbel pre-B cellMus musculusPOLA inhibitorLig4-/-Rev7-/-//AsiSISAR-seq
GSM5508973-PreB-Lig4-Rev1-18hrs-AsisI-SARseq-APH-POLAiAbel pre-B cellMus musculusAphidicolin + POLA inhibitorLig4-/-Rev7-/-//AsiSISAR-seq
GSM5508974-PreB-Lig4-Rev1-18hrs-AsisI-SARseq-contrl-for-APH-POLAi-rep2Abel pre-B cellMus musculusNTLig4-/-Rev7-/-//AsiSISAR-seq
GSM5508975-PreB-Lig4-Rev1-18hrs-AsisI-SARseq-APH-rep2Abel pre-B cellMus musculusAphidicolinLig4-/-Rev7-/-//AsiSISAR-seq
GSM5508976-PreB-Lig4-Rev1-18hrs-AsisI-SARseq-POLAi-rep2Abel pre-B cellMus musculusPOLA inhibitorLig4-/-Rev7-/-//AsiSISAR-seq
GSM5508949-PreB-Lig4-18hrs-AsisI-in-vitro-EDUseq-NT-T4Abel pre-B cellMus musculusNT + T4 DNA PolLig4-/-//AsiSIEdU-seq
GSM5508950-PreB-Lig4-18hrs-AsisI-in-vitro-EDUseq-NT-DNApolIAbel pre-B cellMus musculusNT + DNA Pol ILig4-/-//AsiSIEdU-seq
GSM5508951-PreB-Lig4-18hrs-AsisI-in-vitro-EDUseq-NT-Klenow-Abel pre-B cellMus musculusNT + Klenow-Lig4-/-//AsiSIEdU-seq
GSM5508952-PreB-Lig4-18hrs-AsisI-in-vitro-EDUseq-NT-T4-rep2Abel pre-B cellMus musculusNT + T4 DNA PolLig4-/-//AsiSIEdU-seq
GSM5508953-PreB-Lig4-18hrs-AsisI-in-vitro-EDUseq-NT-DNApolI-rep2Abel pre-B cellMus musculusNT + DNA Pol ILig4-/-//AsiSIEdU-seq
GSM5508954-PreB-Lig4-18hrs-AsisI-in-vitro-EDUseq-NT-Klenow-rep2Abel pre-B cellMus musculusNT + Klenow-Lig4-/-//AsiSIEdU-seq
GSM5508955-PreB-Lig4-18hrs-AsisI-in-vitro-EDUseq-APH-T4Abel pre-B cellMus musculusAphidicolin + T4 DNA PolLig4-/-//AsiSIEdU-seq
GSM5508956-PreB-Lig4-18hrs-AsisI-in-vitro-EDUseq-APH-DNApolIAbel pre-B cellMus musculusAphidicolin + DNA Pol ILig4-/-//AsiSIEdU-seq
GSM5508957-PreB-Lig4-18hrs-AsisI-in-vitro-EDUseq-APH-Klenow-Abel pre-B cellMus musculusAphidicolin + Klenow-Lig4-/-//AsiSIEdU-seq
GSM5508958-PreB-Lig4-18hrs-AsisI-in-vitro-EDUseq-APH-T4-rep2Abel pre-B cellMus musculusAphidicolin + T4 DNA PolLig4-/-//AsiSIEdU-seq
GSM5508959-PreB-Lig4-18hrs-AsisI-in-vitro-EDUseq-APH-DNApolI-rep2Abel pre-B cellMus musculusAphidicolin + DNA Pol ILig4-/-//AsiSIEdU-seq
GSM5508960-PreB-Lig4-18hrs-AsisI-in-vitro-EDUseq-APH-Klenow-rep2Abel pre-B cellMus musculusAphidicolin + Klenow-Lig4-/-//AsiSIEdU-seq
GSM5508961-PreB-Lig4-18hrs-AsisI-in-vitro-EDUseq-APH-POLAi-T4Abel pre-B cellMus musculusAphidicolin + POLA inhibitor + T4 DNA PolLig4-/-//AsiSIEdU-seq
GSM5508962-PreB-Lig4-18hrs-AsisI-in-vitro-EDUseq-APH-POLAi-DNApolIAbel pre-B cellMus musculusAphidicolin + POLA inhibitor + DNA Pol ILig4-/-//AsiSIEdU-seq
GSM5508963-PreB-Lig4-18hrs-AsisI-in-vitro-EDUseq-APH-POLAi-Klenow-Abel pre-B cellMus musculusAphidicolin + POLA inhibitor + Klenow-Lig4-/-//AsiSIEdU-seq


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