 |
DNA Damage Atlas |
|
|
DNA Damage Atlas |
Basic Information
Dataset ID:
PRJNA733683
PMID:
36064968
Technique Type:
ChIP-seq
Publication:
Massively parallel genomic perturbations with multi-target CRISPR interrogates Cas9 activity and DNA repair at endogenous sites
First Author:
Roger S Zou
Last Author:
Taekjip Ha
Year:
2022
Journal:
Nature Cell Biology
Access Link:
Samples ( 91 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| SRX13589811-TA-gh2ax-3h-rep1 | 293T | Homo sapiens | TA multi-target | / | / | / | / | ChIP-seq ( anti-γH2AX ) | |
| SRX13589812-CT-gh2ax-3h-rep1 | 293T | Homo sapiens | CT multi-target | / | / | / | / | ChIP-seq ( anti-γH2AX ) | |
| SRX13589814-GG-gh2ax-3h-rep1 | 293T | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-γH2AX ) | |
| SRX13589815-WT-gh2ax-rep1 | 293T | Homo sapiens | / | / | / | / | / | ChIP-seq ( anti-γH2AX ) | |
| SRX13589840-cgGG-gh2ax-30m-rep1 | 293T | Homo sapiens | light-activation of cgRNA GG multi-target Cas9 | / | / | / | / | ChIP-seq ( anti-γH2AX ) | |
| SRX13589865-cgGG-gh2ax-00m-rep1 | 293T | Homo sapiens | light-activation of cgRNA GG multi-target Cas9 | / | / | / | / | ChIP-seq ( anti-γH2AX ) | |
| SRX13589867-cgGG-gh2ax-10m-rep1 | 293T | Homo sapiens | light-activation of cgRNA GG multi-target Cas9 | / | / | / | / | ChIP-seq ( anti-γH2AX ) | |
| SRX15790079-WT-gh2ax-rep1 | 293T | Homo sapiens | / | / | / | / | / | ChIP-seq ( anti-γH2AX ) | |
| SRX15790080-GG-gh2ax-3h-rep1 | 293T | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-γH2AX ) | |
| SRX15790081-CT-gh2ax-3h-rep1 | 293T | Homo sapiens | CT multi-target | / | / | / | / | ChIP-seq ( anti-γH2AX ) | |
| SRX15790082-TA-gh2ax-3h-rep1 | 293T | Homo sapiens | TA multi-target | / | / | / | / | ChIP-seq ( anti-γH2AX ) | |
| SRX13589813-cgGG-53bp1-00m-rep1 | 293T | Homo sapiens | light-activation of cgRNA GG multi-target Cas9 | / | / | / | / | ChIP-seq ( anti-53BP1 ) | |
| SRX13589816-CT-53bp1-3h-rep1 | 293T | Homo sapiens | CT multi-target | / | / | / | / | ChIP-seq ( anti-53BP1 ) | |
| SRX13589817-GG-53bp1-3h-rep1 | 293T | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-53BP1 ) | |
| SRX13589863-cgGG-53bp1-10m-rep1 | 293T | Homo sapiens | light-activation of cgRNA GG multi-target Cas9 | / | / | / | / | ChIP-seq ( anti-53BP1 ) | |
| SRX13589864-cgGG-53bp1-30m-rep1 | 293T | Homo sapiens | light-activation of cgRNA GG multi-target Cas9 | / | / | / | / | ChIP-seq ( anti-53BP1 ) | |
| SRX13589866-TA-53bp1-3h-rep1 | 293T | Homo sapiens | TA multi-target | / | / | / | / | ChIP-seq ( anti-53BP1 ) | |
| SRX13589884-WT-53bp1-rep1 | 293T | Homo sapiens | / | / | / | / | / | ChIP-seq ( anti-53BP1 ) | |
| SRX15790076-GG-53bp1-3h-rep1 | 293T | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-53BP1 ) | |
| SRX15790077-CT-53bp1-3h-rep1 | 293T | Homo sapiens | CT multi-target | / | / | / | / | ChIP-seq ( anti-53BP1 ) | |
| SRX15790078-TA-53bp1-3h-rep1 | 293T | Homo sapiens | TA multi-target | / | / | / | / | ChIP-seq ( anti-53BP1 ) | |
| SRX15790140-WT-53bp1-rep1 | 293T | Homo sapiens | / | / | / | / | / | ChIP-seq ( anti-53BP1 ) | |
| SRX13589818-GG-mre11-3h-rep1 | 293T | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589819-WT-mre11-rep1 | 293T | Homo sapiens | / | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589820-cgGG-mre11-10m-rep1 | 293T | Homo sapiens | light-activation of cgRNA GG multi-target Cas9 | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589821-CT-mre11-3h-rep1 | 293T | Homo sapiens | CT multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589822-cgGG-mre11-00m-rep1 | 293T | Homo sapiens | light-activation of cgRNA GG multi-target Cas9 | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589823-kGG-mre11-3h-rep2 | 293T | Homo sapiens | kinetics+GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589824-kGG-mre11-3h-rep1 | 293T | Homo sapiens | kinetics+GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589825-kGG-mre11-1h-rep2 | 293T | Homo sapiens | kinetics+GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589826-kGG-mre11-1h-rep1 | 293T | Homo sapiens | kinetics+GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589827-kGG-mre11-30m-rep2 | 293T | Homo sapiens | kinetics+GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589829-kGG-mre11-30m-rep1 | 293T | Homo sapiens | kinetics+GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589833-GG-mre11-3h-rep2 | 293T | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589841-pcGG-mre11-0h-rep1 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589842-pcGG-mre11-1h-rep1 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589857-iGG-mre11-3h-rep1 | WTC-11 iPSCs | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589858-iGG-mre11-3h-rep2 | WTC-11 iPSCs | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589862-cgGG-mre11-30m-rep1 | 293T | Homo sapiens | light-activation of cgRNA GG multi-target Cas9 | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589868-TA-mre11-3h-rep1 | 293T | Homo sapiens | TA multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589869-pcGG-mre11-2h-rep1 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589870-pcGG-mre11-4h-rep1 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589871-pcGG-mre11-0h-rep2 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589872-pcGG-mre11-1h-rep2 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589873-pcGG-mre11-2h-rep2 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX13589874-pcGG-mre11-4h-rep2 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790074-WT-mre11-rep1 | 293T | Homo sapiens | / | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790075-GG-mre11-3h-rep1 | 293T | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790086-GG-mre11-3h-rep2 | 293T | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790090-kGG-mre11-30m-rep1 | 293T | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790091-kGG-mre11-30m-rep2 | 293T | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790092-kGG-mre11-1h-rep1 | 293T | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790093-kGG-mre11-1h-rep2 | 293T | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790094-kGG-mre11-3h-rep1 | 293T | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790095-kGG-mre11-3h-rep2 | 293T | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790096-pcGG-mre11-0h-rep1 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790097-CT-mre11-3h-rep1 | 293T | Homo sapiens | CT multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790098-pcGG-mre11-1h-rep1 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790099-pcGG-mre11-2h-rep1 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790100-pcGG-mre11-4h-rep1 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790101-pcGG-mre11-0h-rep2 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790102-pcGG-mre11-1h-rep2 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790103-pcGG-mre11-2h-rep2 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790104-pcGG-mre11-4h-rep2 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790108-TA-mre11-3h-rep1 | 293T | Homo sapiens | TA multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790136-iGG-mre11-3h-rep1 | WTC-11 iPSCs | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15790137-iGG-mre11-3h-rep2 | WTC-11 iPSCs | Homo sapiens | GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15793067-pcGG-mre11-00m-nD-rep1 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15793068-pcGG-mre11-15m-nD-rep1 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15793069-pcGG-mre11-00m-KU-rep2 | 293T | Homo sapiens | KU-60648+light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15793070-pcGG-mre11-60m-KU-rep2 | 293T | Homo sapiens | KU-60648+light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15793079-pcGG-mre11-30m-nD-rep1 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15793084-pcGG-mre11-60m-nD-rep1 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15793085-pcGG-mre11-00m-nD-rep2 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15793086-pcGG-mre11-15m-nD-rep2 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15793087-pcGG-mre11-30m-nD-rep2 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15793088-pcGG-mre11-60m-nD-rep2 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15793089-pcGG-mre11-00m-KU-rep1 | 293T | Homo sapiens | KU-60648+light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15793090-pcGG-mre11-60m-KU-rep1 | 293T | Homo sapiens | KU-60648+light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15794412-pcGG-mre11-00m-nD-rep1 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15794413-pcGG-mre11-15m-nD-rep1 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15794414-pcGG-mre11-00m-KU-rep2 | 293T | Homo sapiens | KU-60648+light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15794415-pcGG-mre11-60m-KU-rep2 | 293T | Homo sapiens | KU-60648+light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15794424-pcGG-mre11-30m-nD-rep1 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15794429-pcGG-mre11-60m-nD-rep1 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15794430-pcGG-mre11-00m-nD-rep2 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15794431-pcGG-mre11-15m-nD-rep2 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15794432-pcGG-mre11-30m-nD-rep2 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15794433-pcGG-mre11-60m-nD-rep2 | 293T | Homo sapiens | light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15794434-pcGG-mre11-00m-KU-rep1 | 293T | Homo sapiens | KU-60648+light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) | |
| SRX15794435-pcGG-mre11-60m-KU-rep1 | 293T | Homo sapiens | KU-60648+light-deactivation of pcRNA GG multi-target | / | / | / | / | ChIP-seq ( anti-MRE11 ) |
Copyright © 2023 All Rights Reserved by Wu lab