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DNA Damage Atlas |
Basic Information
Dataset ID:
 GSE106822
PMID:
 29432181
Technique Type:
 HTGTS
Publication:
 Three classes of recurrent DNA break clusters in brain progenitors identified by 3D proximity-based break joining assay
First Author:
 Pei-Chi Wei
Last Author:
 Frederick W Alt
Year:
 2018
Journal:
 PANS
Access Link:  
Samples ( 118 )
Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
GSM2854824-Chr1_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr1_sgRNA | HTGTS | |
GSM2854825-Chr1_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr1_sgRNA | HTGTS | |
GSM2854826-Chr1_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr1_sgRNA | HTGTS | |
GSM2854827-Chr1_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr1_sgRNA | HTGTS | |
GSM2854828-Chr1_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr1_sgRNA | HTGTS | |
GSM2854829-Chr1_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr1_sgRNA | HTGTS | |
GSM2854830-Chr2_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr2_sgRNA | HTGTS | |
GSM2854831-Chr2_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr2_sgRNA | HTGTS | |
GSM2854832-Chr2_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr2_sgRNA | HTGTS | |
GSM2854833-Chr2_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr2_sgRNA | HTGTS | |
GSM2854834-Chr2_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr2_sgRNA | HTGTS | |
GSM2854835-Chr2_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr2_sgRNA | HTGTS | |
GSM2854836-Chr3_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr3_sgRNA | HTGTS | |
GSM2854837-Chr3_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr3_sgRNA | HTGTS | |
GSM2854838-Chr3_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr3_sgRNA | HTGTS | |
GSM2854839-Chr3_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr3_sgRNA | HTGTS | |
GSM2854840-Chr3_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr3_sgRNA | HTGTS | |
GSM2854841-Chr3_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr3_sgRNA | HTGTS | |
GSM2854842-Chr4_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr4_sgRNA | HTGTS | |
GSM2854843-Chr4_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr4_sgRNA | HTGTS | |
GSM2854844-Chr4_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr4_sgRNA | HTGTS | |
GSM2854845-Chr4_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr4_sgRNA | HTGTS | |
GSM2854846-Chr4_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr4_sgRNA | HTGTS | |
GSM2854847-Chr4_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr4_sgRNA | HTGTS | |
GSM2854848-Chr5_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr5_sgRNA | HTGTS | |
GSM2854849-Chr5_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr5_sgRNA | HTGTS | |
GSM2854850-Chr5_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr5_sgRNA | HTGTS | |
GSM2854851-Chr5_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr5_sgRNA | HTGTS | |
GSM2854852-Chr5_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr5_sgRNA | HTGTS | |
GSM2854853-Chr5_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr5_sgRNA | HTGTS | |
GSM2854854-Chr6_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr6_sgRNA | HTGTS | |
GSM2854855-Chr6_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr6_sgRNA | HTGTS | |
GSM2854856-Chr6_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr6_sgRNA | HTGTS | |
GSM2854857-Chr6_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr6_sgRNA | HTGTS | |
GSM2854858-Chr6_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr6_sgRNA | HTGTS | |
GSM2854859-Chr6_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr6_sgRNA | HTGTS | |
GSM2854860-Chr7_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr7_sgRNA | HTGTS | |
GSM2854861-Chr7_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr7_sgRNA | HTGTS | |
GSM2854862-Chr7_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr7_sgRNA | HTGTS | |
GSM2854863-Chr7_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr7_sgRNA | HTGTS | |
GSM2854864-Chr7_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr7_sgRNA | HTGTS | |
GSM2854865-Chr7_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr7_sgRNA | HTGTS | |
GSM2854866-Chr8_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr8_sgRNA | HTGTS | |
GSM2854867-Chr8_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr8_sgRNA | HTGTS | |
GSM2854868-Chr8_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr8_sgRNA | HTGTS | |
GSM2854869-Chr8_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr8_sgRNA | HTGTS | |
GSM2854870-Chr8_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr8_sgRNA | HTGTS | |
GSM2854871-Chr8_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr8_sgRNA | HTGTS | |
GSM2854872-Chr9_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr9_sgRNA | HTGTS | |
GSM2854873-Chr9_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr9_sgRNA | HTGTS | |
GSM2854874-Chr9_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr9_sgRNA | HTGTS | |
GSM2854875-Chr9_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr9_sgRNA | HTGTS | |
GSM2854876-Chr9_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr9_sgRNA | HTGTS | |
GSM2854877-Chr9_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr9_sgRNA | HTGTS | |
GSM2854878-Chr10_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr10_sgRNA | HTGTS | |
GSM2854879-Chr10_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr10_sgRNA | HTGTS | |
GSM2854880-Chr10_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr10_sgRNA | HTGTS | |
GSM2854881-Chr10_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr10_sgRNA | HTGTS | |
GSM2854882-Chr10_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr10_sgRNA | HTGTS | |
GSM2854883-Chr10_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr10_sgRNA | HTGTS | |
GSM2854884-Chr11_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr11_sgRNA | HTGTS | |
GSM2854885-Chr11_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr11_sgRNA | HTGTS | |
GSM2854886-Chr11_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr11_sgRNA | HTGTS | |
GSM2854887-Chr11_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr11_sgRNA | HTGTS | |
GSM2854888-Chr11_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr11_sgRNA | HTGTS | |
GSM2854889-Chr11_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr11_sgRNA | HTGTS | |
GSM2854890-Chr13_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr13_sgRNA | HTGTS | |
GSM2854891-Chr13_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr13_sgRNA | HTGTS | |
GSM2854892-Chr13_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr13_sgRNA | HTGTS | |
GSM2854893-Chr13_APH_ExpD | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr13_sgRNA | HTGTS | |
GSM2854894-Chr13_APH_ExpE | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr13_sgRNA | HTGTS | |
GSM2854895-Chr13_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr13_sgRNA | HTGTS | |
GSM2854896-Chr13_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr13_sgRNA | HTGTS | |
GSM2854897-Chr13_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr13_sgRNA | HTGTS | |
GSM2854898-Chr13_DMSO_ExpD | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr13_sgRNA | HTGTS | |
GSM2854899-Chr13_DMSO_ExpE | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr13_sgRNA | HTGTS | |
GSM2854900-Chr14_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr14_sgRNA | HTGTS | |
GSM2854901-Chr14_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr14_sgRNA | HTGTS | |
GSM2854902-Chr14_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr14_sgRNA | HTGTS | |
GSM2854903-Chr14_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr14_sgRNA | HTGTS | |
GSM2854904-Chr14_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr14_sgRNA | HTGTS | |
GSM2854905-Chr14_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr14_sgRNA | HTGTS | |
GSM2854906-Chr17_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr17_sgRNA | HTGTS | |
GSM2854907-Chr17_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr17_sgRNA | HTGTS | |
GSM2854908-Chr17_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr17_sgRNA | HTGTS | |
GSM2854909-Chr17_APH_ExpD | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr17_sgRNA | HTGTS | |
GSM2854910-Chr17_APH_ExpE | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr17_sgRNA | HTGTS | |
GSM2854911-Chr17_APH_ExpF | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr17_sgRNA | HTGTS | |
GSM2854912-Chr17_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr17_sgRNA | HTGTS | |
GSM2854913-Chr17_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr17_sgRNA | HTGTS | |
GSM2854914-Chr17_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr17_sgRNA | HTGTS | |
GSM2854915-Chr17_DMSO_ExpD | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr17_sgRNA | HTGTS | |
GSM2854916-Chr17_DMSO_ExpE | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr17_sgRNA | HTGTS | |
GSM2854917-Chr17_DMSO_ExpF | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr17_sgRNA | HTGTS | |
GSM2854918-Chr18_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr18_sgRNA | HTGTS | |
GSM2854919-Chr18_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr18_sgRNA | HTGTS | |
GSM2854920-Chr18_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr18_sgRNA | HTGTS | |
GSM2854921-Chr18_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr18_sgRNA | HTGTS | |
GSM2854922-Chr18_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr18_sgRNA | HTGTS | |
GSM2854923-Chr18_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr18_sgRNA | HTGTS | |
GSM2854924-Chr19_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr19_sgRNA | HTGTS | |
GSM2854925-Chr19_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr19_sgRNA | HTGTS | |
GSM2854926-Chr19_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr19_sgRNA | HTGTS | |
GSM2854927-Chr19_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr19_sgRNA | HTGTS | |
GSM2854928-Chr19_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr19_sgRNA | HTGTS | |
GSM2854929-Chr19_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr19_sgRNA | HTGTS | |
GSM2854930-ChrX_female_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | ChrX_sgRNA | HTGTS | |
GSM2854931-ChrX_female_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | ChrX_sgRNA | HTGTS | |
GSM2854932-ChrX_female_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | ChrX_sgRNA | HTGTS | |
GSM2854933-ChrX_female_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | ChrX_sgRNA | HTGTS | |
GSM2854934-ChrX_female_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | ChrX_sgRNA | HTGTS | |
GSM2854935-ChrX_female_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | ChrX_sgRNA | HTGTS | |
GSM2854936-ChrX_male_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | ChrX_sgRNA | HTGTS | |
GSM2854937-ChrX_male_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | ChrX_sgRNA | HTGTS | |
GSM2854938-ChrX_male_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | ChrX_sgRNA | HTGTS | |
GSM2854939-ChrX_male_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | ChrX_sgRNA | HTGTS | |
GSM2854940-ChrX_male_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | ChrX_sgRNA | HTGTS | |
GSM2854941-ChrX_male_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | ChrX_sgRNA | HTGTS |
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