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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
GSE140672
PMID:
31875554
Technique Type:
HTGTS
Publication:
Intra-Vκ Cluster Recombination Shapes the Ig Kappa Locus Repertoire
First Author:
Kenta Shinoda
Last Author:
André Nussenzweig
Year:
2019
Journal:
Cell Reports
Access Link:
Samples ( 41 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| GSM4178008-HTGTS_PB_JK1_WT_REP1 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Jκ1 bait | HTGTS | |
| GSM4178009-HTGTS_PB_JK1_WT_REP2 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Jκ1 bait | HTGTS | |
| GSM4178010-HTGTS_PB_JK1_WT_REP3 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Jκ1 bait | HTGTS | |
| GSM4178011-HTGTS_PB_VK1_117_WT_REP1 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178012-HTGTS_PB_VK1_117_WT_REP2 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178013-HTGTS_PB_VK1_117_WT_REP3 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178014-HTGTS_PB_VK1_117_WT_REP4 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178015-HTGTS_PB_VK1_117_WT_REP5 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178016-HTGTS_PB_VK1_117_WT_REP6 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178017-HTGTS_PB_VK1_117_DELJK_REP1 | Abel pre-B cell | Mus musculus | imatinib | DJK | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178018-HTGTS_PB_VK1_117_DELJK_REP2 | Abel pre-B cell | Mus musculus | imatinib | DJK | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178019-HTGTS_PB_VK1_117_DELJK_REP3 | Abel pre-B cell | Mus musculus | imatinib | DJK | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178020-HTGTS_PB_VK1_117_DELJK_REP4 | Abel pre-B cell | Mus musculus | imatinib | DJK | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178021-HTGTS_PB_VK1_117_DELJK_REP5 | Abel pre-B cell | Mus musculus | imatinib | DJK | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178022-HTGTS_PB_VK1_117_DELJK_REP6 | Abel pre-B cell | Mus musculus | imatinib | DJK | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178023-HTGTS_PB_VK1_117_RAG1 | Abel pre-B cell | Mus musculus | imatinib | RAG1-/- | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178024-HTGTS_PB_VK8_34_WT_REP1 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Vκ8–34 bait | HTGTS | |
| GSM4178025-HTGTS_PB_VK8_34_WT_REP2 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Vκ8–34 bait | HTGTS | |
| GSM4178026-HTGTS_PB_VK8_34_WT_REP3 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Vκ8–34 bait | HTGTS | |
| GSM4178027-HTGTS_PB_VK8_34_WT_REP4 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Vκ8–34 bait | HTGTS | |
| GSM4178028-HTGTS_PB_VK8_34_WT_REP5 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Vκ8–34 bait | HTGTS | |
| GSM4178029-HTGTS_PB_VK8_34_WT_REP6 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Vκ8–34 bait | HTGTS | |
| GSM4178030-HTGTS_PB_VK8_34_DELJK_REP1 | Abel pre-B cell | Mus musculus | imatinib | DJK | G1 | / | Vκ8–34 bait | HTGTS | |
| GSM4178031-HTGTS_PB_VK8_34_DELJK_REP2 | Abel pre-B cell | Mus musculus | imatinib | DJK | G1 | / | Vκ8–34 bait | HTGTS | |
| GSM4178032-HTGTS_PB_VK8_34_DELJK_REP3 | Abel pre-B cell | Mus musculus | imatinib | DJK | G1 | / | Vκ8–34 bait | HTGTS | |
| GSM4178033-HTGTS_Spl_B_JK1 | Primary splenic B cell | Mus musculus | / | WT | / | / | Jκ1 bait | HTGTS | |
| GSM4178034-HTGTS_Spl_B_VK1_117_REP1 | Primary splenic B cell | Mus musculus | / | WT | / | / | Vκ1–117 bait | HTGTS | |
| GSM4178035-HTGTS_Spl_B_VK1_117_REP2 | Primary splenic B cell | Mus musculus | / | WT | / | / | Vκ1–117 bait | HTGTS | |
| GSM4178036-HTGTS_Spl_B_VK1_117_REP3 | Primary splenic B cell | Mus musculus | / | WT | / | / | Vκ1–117 bait | HTGTS | |
| GSM4178037-HTGTS_BMPB_VK1_117_REP1 | Primary BM pre-B cell | Mus musculus | / | WT | / | / | Vκ1–117 bait | HTGTS | |
| GSM4178038-HTGTS_BMPB_VK1_117_REP2 | Primary BM pre-B cell | Mus musculus | / | WT | / | / | Vκ1–117 bait | HTGTS | |
| GSM4178039-HTGTS_PB_VK1_117_LIG4 | Abel pre-B cell | Mus musculus | imatinib | LIG4-/- | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178040-HTGTS_PB_VK1_117_ART_clone1 | Abel pre-B cell | Mus musculus | imatinib | ART-/- | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178041-HTGTS_PB_VK1_117_ART_clone2 | Abel pre-B cell | Mus musculus | imatinib | ART-/- | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178042-HTGTS_PBMC_B_JK1 | PBMC B cell | Homo sapiens | / | N/A | / | / | Jκ1 bait | HTGTS | |
| GSM4178043-HTGTS_PBMC_B_VK2_28 | PBMC B cell | Homo sapiens | / | N/A | / | / | Vκ2–28 bait | HTGTS | |
| GSM4178044-HTGTS_PBMC_B_VK3_20 | PBMC B cell | Homo sapiens | / | N/A | / | / | Vκ3–20 bait | HTGTS | |
| GSM4178045-HTGTS_PB_VK1_117_CRISPR_REP1 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178046-HTGTS_PB_VK1_117_CRISPR_REP2 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178047-HTGTS_PB_VK1_117_CRISPR_REP3 | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Vκ1–117 bait | HTGTS | |
| GSM4178048-HTGTS_PB_VK1_117_CRISPR_NO_STI | Abel pre-B cell | Mus musculus | imatinib | WT | G1 | / | Vκ1–117 bait | HTGTS |
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