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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
GSE130265
PMID:
31666703
Technique Type:
CSR-HTGTS
Publication:
Fundamental roles of chromatin loop extrusion in antibody class switching
First Author:
Xuefei Zhang
Last Author:
Frederick W Alt
Year:
2019
Journal:
Nature
Access Link:
Samples ( 21 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| GSM3734883-CH12F3NCD_1 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | CH12F3NC-delta | / | / | target locus: non-coding IgH Sm-Sa deletion | CSR-HTGTS | |
| GSM3734884-CH12F3NCD_2 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | CH12F3NC-delta | / | / | target locus: non-coding IgH Sm-Sa deletion | CSR-HTGTS | |
| GSM3734885-CH12F3NCD_3 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | CH12F3NC-delta | / | / | target locus: non-coding IgH Sm-Sa deletion | CSR-HTGTS | |
| GSM3734886-IaD_1 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | I-alpha-delta | / | / | target locus: Ia deletion in non-coding IgH Sm-Sa deletion cells | CSR-HTGTS | |
| GSM3734887-IaD_2 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | I-alpha-delta | / | / | target locus: Ia deletion in non-coding IgH Sm-Sa deletion cells | CSR-HTGTS | |
| GSM3734888-IaD_3 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | I-alpha-delta | / | / | target locus: Ia deletion in non-coding IgH Sm-Sa deletion cells | CSR-HTGTS | |
| GSM3734889-IaD_4 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | I-alpha-delta | / | / | target locus: Ia deletion in non-coding IgH Sm-Sa deletion cells | CSR-HTGTS | |
| GSM3734890-IaD_5 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | I-alpha-delta | / | / | target locus: Ia deletion in non-coding IgH Sm-Sa deletion cells | CSR-HTGTS | |
| GSM3734891-IaD_6 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | I-alpha-delta | / | / | target locus: Ia deletion in non-coding IgH Sm-Sa deletion cells | CSR-HTGTS | |
| GSM3734892-IaD-i3CBEc_1 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | Ialpha-delta-i3CBEc | / | / | target locus: three CBEs insertion downstream of Cg2a in Ia deleted cells | CSR-HTGTS | |
| GSM3734893-IaD-i3CBEc_2 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | Ialpha-delta-i3CBEc | / | / | target locus: three CBEs insertion downstream of Cg2a in Ia deleted cells | CSR-HTGTS | |
| GSM3734894-IaD-i3CBEc_3 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | Ialpha-delta-i3CBEc | / | / | target locus: three CBEs insertion downstream of Cg2a in Ia deleted cells | CSR-HTGTS | |
| GSM3734895-CH12F3NCD_4 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | CH12F3NC-delta | / | / | target locus: non-coding IgH Sm-Sa deletion | CSR-HTGTS | |
| GSM3734896-CH12F3NCD_5 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | CH12F3NC-delta | / | / | target locus: non-coding IgH Sm-Sa deletion | CSR-HTGTS | |
| GSM3734897-CH12F3NCD_6 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | CH12F3NC-delta | / | / | target locus: non-coding IgH Sm-Sa deletion | CSR-HTGTS | |
| GSM3734904-i3CBEc_1 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | i3CBEc | / | / | target locus: three CBEs insertion with the convergent orientation as 3'CBEs in non-coding IgH Sm-Sa deletion cells | CSR-HTGTS | |
| GSM3734905-i3CBEc_2 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | i3CBEc | / | / | target locus: three CBEs insertion with the convergent orientation as 3'CBEs in non-coding IgH Sm-Sa deletion cells | CSR-HTGTS | |
| GSM3734906-i3CBEc_3 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | i3CBEc | / | / | target locus: three CBEs insertion with the convergent orientation as 3'CBEs in non-coding IgH Sm-Sa deletion cells | CSR-HTGTS | |
| GSM3734907-i3CBEc-3primeCBEsD_1 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | i3CBEc-3'CBEs-delta | / | / | target locus: 3'BCEs deletion in three CBEs inserted cells | CSR-HTGTS | |
| GSM3734908-i3CBEc-3primeCBEsD_2 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | i3CBEc-3'CBEs-delta | / | / | target locus: 3'BCEs deletion in three CBEs inserted cells | CSR-HTGTS | |
| GSM3734909-i3CBEc-3primeCBEsD_3 | CH12F3 murine lymphoma cell | Mus musculus | cytokine stimulation | i3CBEc-3'CBEs-delta | / | / | target locus: 3'BCEs deletion in three CBEs inserted cells | CSR-HTGTS |
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