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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
GSE178316
PMID:
34652429
Technique Type:
ChIP-seq
Publication:
The adeno-associated virus 2 genome and Rep 68/78 proteins interact with cellular sites of DNA damage
First Author:
Maria Boftsi
Last Author:
Kinjal Majumder
Year:
2022
Journal:
Human Molecular Genetics
Access Link:
Samples ( 24 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| GSM5387588-293_24hpd_gh2ax_1 | Epithelial (tissue: Kidney) | Homo sapiens | / | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387589-293_24hpd_gh2ax_2 | Epithelial (tissue: Kidney) | Homo sapiens | / | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387590-293_24hpd_input | Epithelial (tissue: Kidney) | Homo sapiens | / | / | / | / | / | ChIP-seq (Input) | |
| GSM5387595-U2OS_24hpd_gh2ax_1 | Epithelial (tissue:Bone; disease: Osteosarcoma) | Homo sapiens | / | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387596-U2OS_24hpd_gh2ax_2 | Epithelial (tissue:Bone; disease: Osteosarcoma) | Homo sapiens | / | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387597-U2OS_24hpd_hu_gh2ax_1 | Epithelial (tissue:Bone; disease: Osteosarcoma) | Homo sapiens | Hydroxyurea | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387598-U2OS_24hpd_hu_gh2ax_2 | Epithelial (tissue:Bone; disease: Osteosarcoma) | Homo sapiens | Hydroxyurea | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387599-U2OS_24hpd_input | Epithelial (tissue:Bone; disease: Osteosarcoma) | Homo sapiens | / | / | / | / | / | ChIP-seq (Input) | |
| GSM5387604-U2OS_AAV_24hpi_gh2ax_1 | Epithelial (tissue:Bone; disease: Osteosarcoma) | Homo sapiens | AAV2 24hpi | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387605-U2OS_AAV_24hpi_gh2ax_2 | Epithelial (tissue:Bone; disease: Osteosarcoma) | Homo sapiens | AAV2 24hpi | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387606-U2OS_AAV_36hpi_gh2ax_1 | Epithelial (tissue:Bone; disease: Osteosarcoma) | Homo sapiens | AAV2 36hpi | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387607-U2OS_AAV_36hpi_gh2ax_2 | Epithelial (tissue:Bone; disease: Osteosarcoma) | Homo sapiens | AAV2 36hpi | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387608-U2OS_AAV_24hpi_input | Epithelial (tissue:Bone; disease: Osteosarcoma) | Homo sapiens | AAV2 24hpi | / | / | / | / | ChIP-seq (Input) | |
| GSM5387613-293_AAV_24hpi_gh2ax_1 | Epithelial (tissue: Kidney) | Homo sapiens | AAV2 24hpi | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387614-293_AAV_24hpi_gh2ax_2 | Epithelial (tissue: Kidney) | Homo sapiens | AAV2 24hpi | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387615-293_pHelp_AAV_24hpi_gh2ax_1 | Epithelial (tissue: Kidney) | Homo sapiens | AAV2 24hpi | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387616-293_pHelp_AAV_24hpi_gh2ax_2 | Epithelial (tissue: Kidney) | Homo sapiens | AAV2 24hpi | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387617-293_mock_gh2ax_1 | Epithelial (tissue: Kidney) | Homo sapiens | / | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387618-293_mock_gh2ax_2 | Epithelial (tissue: Kidney) | Homo sapiens | / | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387619-293_mock_input | Epithelial (tissue: Kidney) | Homo sapiens | / | / | / | / | / | ChIP-seq (Input) | |
| GSM5387620-293_aav_input | Epithelial (tissue: Kidney) | Homo sapiens | AAV2 24hpi | / | / | / | / | ChIP-seq (Input) | |
| GSM5387621-U2OS_rAAV_24hpi_gh2ax_1 | Epithelial (tissue:Bone; disease: Osteosarcoma) | Homo sapiens | rAAV2 24hpi | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387622-U2OS_rAAV_24hpi_gh2ax_2 | Epithelial (tissue:Bone; disease: Osteosarcoma) | Homo sapiens | rAAV2 24hpi | / | / | / | / | ChIP-seq (anti-γH2AX) | |
| GSM5387623-U2OS_rAAV_24hpi_input | Epithelial (tissue:Bone; disease: Osteosarcoma) | Homo sapiens | rAAV2 24hpi | / | / | / | / | ChIP-seq (Input) |
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