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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
GSE154811
PMID:
33760805
Technique Type:
ENDseq + TrAEL-seq
Publication:
Genome-wide analysis of DNA replication and DNA double-strand breaks using TrAEL-seq
First Author:
Neesha Kara
Last Author:
Jonathan Houseley
Year:
2021
Journal:
PLOS Biology
Access Link:
Samples ( 16 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| GSM4680450-fob1_SfiI_END-seq | / | Saccharomyces cerevisiae | YPD | fob1Δ | Exo VII + Exo T | / | SfiI | END-seq | |
| GSM4680456-3xCUP1_Cu_END-seq | / | Saccharomyces cerevisiae | SD + CuSO4 | / | Exo VII + Exo T | / | / | END-seq | |
| GSM4680458-3xCUP1_END-seq | / | Saccharomyces cerevisiae | SD | / | Exo VII + Exo T | / | / | END-seq | |
| GSM5005333-NotI_PmeI_SfiI_END-seq | / | Saccharomyces cerevisiae | YPD | / | Exo VII + Exo T | / | NotI PmeI SfiI | END-seq | |
| GSM4680451-dmc1_TrAEL-seq | / | Saccharomyces cerevisiae | Sporulation for 7 hours | dmcΔ | / | / | / | TrAEL-seq | |
| GSM4680452-fob1_YPD_TrAEL-seq | / | Saccharomyces cerevisiae | YPD | fob1Δ | / | / | / | TrAEL-seq | |
| GSM4680453-rad52_YPD_TrAEL-seq | / | Saccharomyces cerevisiae | YPD | radΔ | / | / | / | TrAEL-seq | |
| GSM4680454-SfiI_TrAEL-seq | / | Saccharomyces cerevisiae | / | / | / | / | Sfil | TrAEL-seq | |
| GSM4680455-wt_YPD_TrAEL-seq | / | Saccharomyces cerevisiae | / | WT | / | / | / | TrAEL-seq | |
| GSM4680457-3xCUP1_Cu_TrAEL-seq | / | Saccharomyces cerevisiae | SD + CuSO4 | / | / | / | / | TrAEL-seq | |
| GSM4680459-3xCUP1_TrAEL-seq | / | Saccharomyces cerevisiae | SD | / | / | / | / | TrAEL-seq | |
| GSM4680460-BY4741_RAF_to_GAL_TrAEL-seq | / | Saccharomyces cerevisiae | Ypraf + Gal | / | / | / | / | TrAEL-seq | |
| GSM4680466-hESC_Retinoic_acid_TrAEL-seq | hESC | Homo sapiens | retinoic acid-induced differentiation | / | / | / | / | TrAEL-seq | |
| GSM4680467-hESC_untreated_TrAEL-seq | hESC | Homo sapiens | N2B27 + retinoic acid | / | / | / | / | TrAEL-seq | |
| GSM4680468-rnh201_YPD_TrAEL-seq | / | Saccharomyces cerevisiae | YPD | rnh201Δ | / | / | / | TrAEL-seq | |
| GSM4680469-rnh202_YPD_TrAEL-seq | / | Saccharomyces cerevisiae | YPD | rnh202Δ | / | / | / | TrAEL-seq |
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