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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
GSE149807
PMID:
33651987
Technique Type:
ChIP-seq
Publication:
Strand-specific ChIP-seq at DNA breaks distinguishes ssDNA versus dsDNA binding and refutes single-stranded nucleosomes
First Author:
Martina Peritore
Last Author:
Boris Pfander
Year:
2021
Journal:
Molecular Cell
Access Link:
Samples ( 99 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| GSM4513191-AsiSI_gH2A_1_0h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (0hr) | ChIP-seq (anti-γH2AX) | |
| GSM4513192-AsiSI_gH2A_1_2h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (2hrs) | ChIP-seq (anti-γH2AX) | |
| GSM4513193-AsiSI_gH2A_1_4h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (4hrs) | ChIP-seq (anti-γH2AX) | |
| GSM4513194-AsiSI_gH2A_1_6h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (6hrs) | ChIP-seq (anti-γH2AX) | |
| GSM4513195-AsiSI_gH2A_2_0h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (0hr) | ChIP-seq (anti-γH2AX) | |
| GSM4513196-AsiSI_gH2A_2_2h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (2hrs) | ChIP-seq (anti-γH2AX) | |
| GSM4513197-AsiSI_gH2A_2_4h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (4hrs) | ChIP-seq (anti-γH2AX) | |
| GSM4513198-AsiSI_gH2A_2_6h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (6hrs) | ChIP-seq (anti-γH2AX) | |
| GSM4513223-AsiSI_IN_1_0h_1 | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (0hr) | ChIP-seq (Input) | |
| GSM4513224-AsiSI_IN_1_0h_2 | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (0hr) | ChIP-seq (Input) | |
| GSM4513225-AsiSI_IN_1_2h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (2hrs) | ChIP-seq (Input) | |
| GSM4513226-AsiSI_IN_1_4h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (4hrs) | ChIP-seq (Input) | |
| GSM4513227-AsiSI_IN_1_6h_1 | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (6hrs) | ChIP-seq (Input) | |
| GSM4513228-AsiSI_IN_1_6h_2 | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (6hrs) | ChIP-seq (Input) | |
| GSM4513229-AsiSI_IN_2_0h_1 | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (0hr) | ChIP-seq (Input) | |
| GSM4513230-AsiSI_IN_2_0h_2 | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (0hr) | ChIP-seq (Input) | |
| GSM4513231-AsiSI_IN_2_2h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (2hrs) | ChIP-seq (Input) | |
| GSM4513232-AsiSI_IN_2_4h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (4hrs) | ChIP-seq (Input) | |
| GSM4513233-AsiSI_IN_2_6h_1 | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (6hrs) | ChIP-seq (Input) | |
| GSM4513234-AsiSI_IN_2_6h_2 | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (6hrs) | ChIP-seq (Input) | |
| GSM4513235-AsiSI_IN_3_0h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (0hr) | ChIP-seq (Input) | |
| GSM4513236-AsiSI_IN_3_6h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (6hrs) | ChIP-seq (Input) | |
| GSM4513237-AsiSI_IN_4_0h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (0hr) | ChIP-seq (Input) | |
| GSM4513238-AsiSI_IN_4_6h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (6hrs) | ChIP-seq (Input) | |
| GSM4513239-AsiSI_IN_5_0h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (0hr) | ChIP-seq (Input) | |
| GSM4513240-AsiSI_IN_5_6h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (6hrs) | ChIP-seq (Input) | |
| GSM4513241-AsiSI_IN_6_0h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (0hr) | ChIP-seq (Input) | |
| GSM4513242-AsiSI_IN_6_6h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (6hrs) | ChIP-seq (Input) | |
| GSM4513243-AsiSI_IN_7_0h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (0hr) | ChIP-seq (Input) | |
| GSM4513244-AsiSI_IN_7_6h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (6hrs) | ChIP-seq (Input) | |
| GSM4513245-AsiSI_RPA_1_0h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (0hr) | ChIP-seq (anti-RPA) | |
| GSM4513246-AsiSI_RPA_1_2h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (2hrs) | ChIP-seq (anti-RPA) | |
| GSM4513247-AsiSI_RPA_1_4h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (4hrs) | ChIP-seq (anti-RPA) | |
| GSM4513248-AsiSI_RPA_1_6h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (6hrs) | ChIP-seq (anti-RPA) | |
| GSM4513249-AsiSI_RPA_2_0h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (0hr) | ChIP-seq (anti-RPA) | |
| GSM4513250-AsiSI_RPA_2_2h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (2hrs) | ChIP-seq (anti-RPA) | |
| GSM4513251-AsiSI_RPA_2_4h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (4hrs) | ChIP-seq (anti-RPA) | |
| GSM4513252-AsiSI_RPA_2_6h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (6hrs) | ChIP-seq (anti-RPA) | |
| GSM4513303-fun30_ctr_RPA_1_0h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (0hr) | ChIP-seq (anti-RPA) | |
| GSM4513304-fun30_ctr_RPA_1_2h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (2hrs) | ChIP-seq (anti-RPA) | |
| GSM4513305-fun30_ctr_RPA_1_4h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (4hrs) | ChIP-seq (anti-RPA) | |
| GSM4513306-fun30_ctr_RPA_1_6h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (6hrs) | ChIP-seq (anti-RPA) | |
| GSM4513307-fun30_ctr_RPA_2_0h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (0hr) | ChIP-seq (anti-RPA) | |
| GSM4513308-fun30_ctr_RPA_2_2h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (2hrs) | ChIP-seq (anti-RPA) | |
| GSM4513309-fun30_ctr_RPA_2_4h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (4hrs) | ChIP-seq (anti-RPA) | |
| GSM4513310-fun30_ctr_RPA_2_6h | / | Saccharomyces cerevisiae | / | / | / | / | AsiSI (6hrs) | ChIP-seq (anti-RPA) | |
| GSM4513319-fun30_mut_RPA_1_0h | / | Saccharomyces cerevisiae | / | fun30Δ rad9Δ | / | / | AsiSI (0hr) | ChIP-seq (anti-RPA) | |
| GSM4513320-fun30_mut_RPA_1_2h | / | Saccharomyces cerevisiae | / | fun30Δ rad9Δ | / | / | AsiSI (2hrs) | ChIP-seq (anti-RPA) | |
| GSM4513321-fun30_mut_RPA_1_4h | / | Saccharomyces cerevisiae | / | fun30Δ rad9Δ | / | / | AsiSI (4hrs) | ChIP-seq (anti-RPA) | |
| GSM4513322-fun30_mut_RPA_1_6h | / | Saccharomyces cerevisiae | / | fun30Δ rad9Δ | / | / | AsiSI (6hrs) | ChIP-seq (anti-RPA) | |
| GSM4513323-fun30_mut_RPA_2_0h | / | Saccharomyces cerevisiae | / | fun30Δ rad9Δ | / | / | AsiSI (0hr) | ChIP-seq (anti-RPA) | |
| GSM4513324-fun30_mut_RPA_2_2h | / | Saccharomyces cerevisiae | / | fun30Δ rad9Δ | / | / | AsiSI (2hrs) | ChIP-seq (anti-RPA) | |
| GSM4513325-fun30_mut_RPA_2_4h | / | Saccharomyces cerevisiae | / | fun30Δ rad9Δ | / | / | AsiSI (4hrs) | ChIP-seq (anti-RPA) | |
| GSM4513326-fun30_mut_RPA_2_6h | / | Saccharomyces cerevisiae | / | fun30Δ rad9Δ | / | / | AsiSI (6hrs) | ChIP-seq (anti-RPA) | |
| GSM4513339-HO_gH2A_1_0h | / | Saccharomyces cerevisiae | / | / | / | / | HO(0hr) | ChIP-seq (anti-γH2AX) | |
| GSM4513340-HO_gH2A_1_2h | / | Saccharomyces cerevisiae | / | / | / | / | HO(2hr) | ChIP-seq (anti-γH2AX) | |
| GSM4513341-HO_gH2A_1_4h | / | Saccharomyces cerevisiae | / | / | / | / | HO(4hr) | ChIP-seq (anti-γH2AX) | |
| GSM4513342- HO_gH2A_2_0h | / | Saccharomyces cerevisiae | / | / | / | / | HO(0hr) | ChIP-seq (anti-γH2AX) | |
| GSM4513343-HO_gH2A_2_4h | / | Saccharomyces cerevisiae | / | / | / | / | HO(4hr) | ChIP-seq (anti-γH2AX) | |
| GSM4513357-HO_IN_1_0h | / | Saccharomyces cerevisiae | / | / | / | / | HO (0hr) | ChIP-seq (Input) | |
| GSM4513358-HO_IN_1_2h | / | Saccharomyces cerevisiae | / | / | / | / | HO (2hrs) | ChIP-seq (Input) | |
| GSM4513359-HO_IN_1_4h | / | Saccharomyces cerevisiae | / | / | / | / | HO (4hrs) | ChIP-seq (Input) | |
| GSM4513360-HO_IN_2_0h | / | Saccharomyces cerevisiae | / | / | / | / | HO (0hr) | ChIP-seq (Input) | |
| GSM4513361-HO_IN_2_4h | / | Saccharomyces cerevisiae | / | / | / | / | HO (4hrs) | ChIP-seq (Input) | |
| GSM4513368-HO_Rad51_1_0h | / | Saccharomyces cerevisiae | / | / | / | / | HO (0hr) | ChIP-seq (anti-RAD51) | |
| GSM4513369-HO_Rad51_1_4h | / | Saccharomyces cerevisiae | / | / | / | / | HO (4hrs) | ChIP-seq (anti-RAD51) | |
| GSM4513370-HO_Rad51_2_0h | / | Saccharomyces cerevisiae | / | / | / | / | HO (0hr) | ChIP-seq (anti-RAD51) | |
| GSM4513371-HO_Rad51_2_4h | / | Saccharomyces cerevisiae | / | / | / | / | HO (4hrs) | ChIP-seq (anti-RAD51) | |
| GSM4513372-HO_RPA_1_0h | / | Saccharomyces cerevisiae | / | / | / | / | HO (0hr) | ChIP-seq (anti-RPA) | |
| GSM4513373-HO_RPA_1_2h | / | Saccharomyces cerevisiae | / | / | / | / | HO (2hrs) | ChIP-seq (anti-RPA) | |
| GSM4513374-HO_RPA_1_4h | / | Saccharomyces cerevisiae | / | / | / | / | HO (4hrs) | ChIP-seq (anti-RPA) | |
| GSM4513375-HO_RPA_2_0h | / | Saccharomyces cerevisiae | / | / | / | / | HO (0hr) | ChIP-seq (anti-RPA) | |
| GSM4513376-HO_RPA_2_4h | / | Saccharomyces cerevisiae | / | / | / | / | HO (4hrs) | ChIP-seq (anti-RPA) | |
| GSM4513377-HO_RPA_3_0h | / | Saccharomyces cerevisiae | / | / | / | / | HO (0hr) | ChIP-seq (anti-RPA) | |
| GSM4513378-HO_RPA_3_4h | / | Saccharomyces cerevisiae | / | / | / | / | HO (4hrs) | ChIP-seq (anti-RPA) | |
| GSM5005949-HO_asy_IN_0h_I | / | Saccharomyces cerevisiae | / | / | / | / | HO (0hr) | ChIP-seq (Input) | |
| GSM5005950-HO_asy_IN_2h_I | / | Saccharomyces cerevisiae | / | / | / | / | HO (2hrs) | ChIP-seq (Input) | |
| GSM5005951-HO_asy_IN_4h_I | / | Saccharomyces cerevisiae | / | / | / | / | HO (4hrs) | ChIP-seq (Input) | |
| GSM5005952-HO_asy_RPA_0h_I | / | Saccharomyces cerevisiae | / | / | / | / | HO (0hr) | ChIP-seq (anti-RPA) | |
| GSM5005953-HO_asy_RPA_2h_I | / | Saccharomyces cerevisiae | / | / | / | / | HO (2hrs) | ChIP-seq (anti-RPA) | |
| GSM5005954-HO_asy_RPA_4h_I | / | Saccharomyces cerevisiae | / | / | / | / | HO (4hrs) | ChIP-seq (anti-RPA) | |
| GSM5005958-HO_asy_IN_0h_II | / | Saccharomyces cerevisiae | / | / | / | / | HO (0hr) | ChIP-seq (Input) | |
| GSM5005959-HO_asy_IN_2h_II | / | Saccharomyces cerevisiae | / | / | / | / | HO (2hrs) | ChIP-seq (Input) | |
| GSM5005960-HO_asy_IN_4h_II | / | Saccharomyces cerevisiae | / | / | / | / | HO (4hrs) | ChIP-seq (Input) | |
| GSM5005961-HO_asy_RPA_0h_II | / | Saccharomyces cerevisiae | / | / | / | / | HO (0hr) | ChIP-seq (anti-RPA) | |
| GSM5005962-HO_asy_RPA_2h_II | / | Saccharomyces cerevisiae | / | / | / | / | HO (2hrs) | ChIP-seq (anti-RPA) | |
| GSM5005963-HO_asy_RPA_4h_II | / | Saccharomyces cerevisiae | / | / | / | / | HO (4hrs) | ChIP-seq (anti-RPA) | |
| GSM4513327-HO_Ddc1_1_0h | / | Saccharomyces cerevisiae | / | / | / | / | HO (0hr) | ChIP-seq (anti-Ddc1) | |
| GSM4513328-HO_Ddc1_1_2h | / | Saccharomyces cerevisiae | / | / | / | / | HO (2hrs) | ChIP-seq (anti-Ddc1) | |
| GSM4513329-HO_Ddc1_1_4h | / | Saccharomyces cerevisiae | / | / | / | / | HO (4hrs) | ChIP-seq (anti-Ddc1) | |
| GSM4513330-HO_Ddc1_2_0h | / | Saccharomyces cerevisiae | / | / | / | / | HO (0hr) | ChIP-seq (anti-Ddc1) | |
| GSM4513331-HO_Ddc1_2_2h | / | Saccharomyces cerevisiae | / | / | / | / | HO (2hrs) | ChIP-seq (anti-Ddc1) | |
| GSM4513332-HO_Ddc1_2_4h | / | Saccharomyces cerevisiae | / | / | / | / | HO (4hrs) | ChIP-seq (anti-Ddc1) | |
| GSM4513333-HO_Dpb11_1_0h | / | Saccharomyces cerevisiae | / | / | / | / | HO (0hr) | ChIP-seq (anti-Dpb11) | |
| GSM4513334-HO_Dpb11_1_2h | / | Saccharomyces cerevisiae | / | / | / | / | HO (2hrs) | ChIP-seq (anti-Dpb11) | |
| GSM4513335-HO_Dpb11_1_4h | / | Saccharomyces cerevisiae | / | / | / | / | HO (4hrs) | ChIP-seq (anti-Dpb11) | |
| GSM4513336-HO_Dpb11_2_0h | / | Saccharomyces cerevisiae | / | / | / | / | HO (0hr) | ChIP-seq (anti-Dpb11) | |
| GSM4513337-HO_Dpb11_2_2h | / | Saccharomyces cerevisiae | / | / | / | / | HO (2hrs) | ChIP-seq (anti-Dpb11) | |
| GSM4513338-HO_Dpb11_2_4h | / | Saccharomyces cerevisiae | / | / | / | / | HO (4hrs) | ChIP-seq (anti-Dpb11) |
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