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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
GSE79892
PMID:
27526713
Technique Type:
LAM-HTGTS
Publication:
Orientation-specific RAG activity in chromosomal loop domains contributes to Tcrd V(D)J recombination during T cell development
First Author:
Lijuan Zhao
Last Author:
Frederick W Alt
Year:
2016
Journal:
Journal of Experimental Medicine
Access Link:
Samples ( 31 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| GSM2107911-Trdd2_5P_WT_rep1 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdd2 | LAM-HTGTS | |
| GSM2107912-Trdd2_5P_WT_rep2 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdd2 | LAM-HTGTS | |
| GSM2107913-Trdd2_5P_WT_rep3 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdd2 | LAM-HTGTS | |
| GSM2107914-Trdd2_5P_WT_rep4 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdd2 | LAM-HTGTS | |
| GSM2107915-Trdd2_5P_INT1-2KO_rep1 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | INT1-2KO | / | / | Trdd2 | LAM-HTGTS | |
| GSM2107916-Trdd2_5P_INT1-2KO_rep2 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | INT1-2KO | / | / | Trdd2 | LAM-HTGTS | |
| GSM2107917-Trdd2_5P_INT1-2KO_rep3 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | INT1-2KO | / | / | Trdd2 | LAM-HTGTS | |
| GSM2107918-Trdd2_3P_WT_rep1 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdd2 | LAM-HTGTS | |
| GSM2107919-Trdd2_3P_WT_rep2 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdd2 | LAM-HTGTS | |
| GSM2107920-Trdd2_3P_WT_rep3 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdd2 | LAM-HTGTS | |
| GSM2107921-Trdd2_3P_INT1-2KO_rep1 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | INT1-2KO | / | / | Trdd2 | LAM-HTGTS | |
| GSM2107922-Trdd2_3P_INT1-2KO_rep2 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | INT1-2KO | / | / | Trdd2 | LAM-HTGTS | |
| GSM2107923-Trdd2_3P_INT1-2KO_rep3 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | INT1-2KO | / | / | Trdd2 | LAM-HTGTS | |
| GSM2107924-Trdd1_5P_WT_rep1 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdd1 | LAM-HTGTS | |
| GSM2107925-Trdd1_5P_WT_rep2 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdd1 | LAM-HTGTS | |
| GSM2107926-Trdd1_5P_WT_rep3 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdd1 | LAM-HTGTS | |
| GSM2107927-Trdd1_5P_INT1-2KO_rep1 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | INT1-2KO | / | / | Trdd1 | LAM-HTGTS | |
| GSM2107928-Trdd1_5P_INT1-2KO_rep2 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | INT1-2KO | / | / | Trdd1 | LAM-HTGTS | |
| GSM2107929-Trdd1_5P_INT1-2KO_rep3 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | INT1-2KO | / | / | Trdd1 | LAM-HTGTS | |
| GSM2107930-Trdd1_3P_WT_rep1 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdd1 | LAM-HTGTS | |
| GSM2107931-Trdd1_3P_WT_rep2 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdd1 | LAM-HTGTS | |
| GSM2107932-Trdd1_3P_WT_rep3 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdd1 | LAM-HTGTS | |
| GSM2107933-Trdd1_3P_INT1-2KO_rep1 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | INT1-2KO | / | / | Trdd1 | LAM-HTGTS | |
| GSM2107934-Trdd1_3P_INT1-2KO_rep2 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | INT1-2KO | / | / | Trdd1 | LAM-HTGTS | |
| GSM2107935-Trdd1_3P_INT1-2KO_rep3 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | INT1-2KO | / | / | Trdd1 | LAM-HTGTS | |
| GSM2147427-Trdj1_5P_WT_rep1 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdj1 | LAM-HTGTS | |
| GSM2147428-Trdj1_5P_WT_rep2 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdj1 | LAM-HTGTS | |
| GSM2147429-Trdj1_5P_WT_rep3 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdj1 | LAM-HTGTS | |
| GSM2147430-Trdj1_3P_WT_rep1 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdj1 | LAM-HTGTS | |
| GSM2147431-Trdj1_3P_WT_rep2 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdj1 | LAM-HTGTS | |
| GSM2147432-Trdj1_3P_WT_rep3 | OP9-DL1 | Mus musculus | IL-7 + Flt3-L | WT | / | / | Trdj1 | LAM-HTGTS |
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