DNA Damage Atlas



Basic Information

Dataset ID:

  GSE90054


PMID:

  28207748


Technique Type:

  HydEn-seq


Publication:

  Nucleotide pools dictate the identity and frequency of ribonucleotide incorporation in mitochondrial DNA


First Author:

  Anna-Karin Berglund


Last Author:

  Anders R Clausen


Year:

  2017


Journal:

  PLoS Genetics


Access Link:   

Samples ( 44 )

  Sample Name    Cell Line/Tissue    Organism    Treatment    Genotype    In-situ Treatment    Cell Phase    Bait/Targeted Break    Technique    fastqc  
GSM2396656-HeLa_A_KClHeLaHomo sapiensKClWT///HydEn-seq
GSM2396657-HeLa_A_KOHHeLaHomo sapiensKOHWT///HydEn-seq
GSM2396658-HeLa_B_KClHeLaHomo sapiensKClWT///HydEn-seq
GSM2396659-HeLa_B_KOHHeLaHomo sapiensKOHWT///HydEn-seq
GSM2396660-HeLa_C_KClHeLaHomo sapiensKClWT///HydEn-seq
GSM2396661-HeLa_C_KOHHeLaHomo sapiensKOHWT///HydEn-seq
GSM2396662-HeLa_A_KCl_HincIIHeLaHomo sapiensKClWT//restriction digest: HincIIHydEn-seq
GSM2396663-HeLa_A_KOH_HincIIHeLaHomo sapiensKOHWT//restriction digest: HincIIHydEn-seq
GSM2396664-HeLa_B_KCl_HincIIHeLaHomo sapiensKClWT//restriction digest: HincIIHydEn-seq
GSM2396665-HeLa_B_KOH_HincIIHeLaHomo sapiensKOHWT//restriction digest: HincIIHydEn-seq
GSM2396666-HeLa_C_KCl_HincIIHeLaHomo sapiensKClWT//restriction digest: HincIIHydEn-seq
GSM2396667-HeLa_C_KOH_HincIIHeLaHomo sapiensKOHWT//restriction digest: HincIIHydEn-seq
GSM2396668-FB1-KClFibroblast cellHomo sapiensKClWT///HydEn-seq
GSM2396669-FB1-KOHFibroblast cellHomo sapiensKOHWT///HydEn-seq
GSM2396670-MPV17-Q93P-KClPatient-derived fibroblast cellHomo sapiensKClMPV17 p.G93P (homozygous)///HydEn-seq
GSM2396671-MPV17-Q93P-KOHPatient-derived fibroblast cellHomo sapiensKOHMPV17 p.G93P (homozygous)///HydEn-seq
GSM2396672-TK2-Q87_N100S-KClPatient-derived fibroblast cellHomo sapiensKClTK2 p.Q87*;p.N100S///HydEn-seq
GSM2396673-TK2-Q87_N100S-KOHPatient-derived fibroblast cellHomo sapiensKOHTK2 p.Q87*;p.N100S///HydEn-seq
GSM2396674-MPV17-A23P_E45D-KClPatient-derived fibroblast cellHomo sapiensKClMPV17 p.A23P;p.E45DfsX8///HydEn-seq
GSM2396675-MPV17-A23P_E45D-KOHPatient-derived fibroblast cellHomo sapiensKOHMPV17 p.A23P;p.E45DfsX8///HydEn-seq
GSM2396676-DGUOK-F256-KClPatient-derived fibroblast cellHomo sapiensKClDGUOK p.F256* (homozygous)///HydEn-seq
GSM2396677-DGUOK-F256-KOHPatient-derived fibroblast cellHomo sapiensKOHDGUOK p.F256* (homozygous)///HydEn-seq
GSM2396678-DGUOK-N46S_delGC-KClPatient-derived fibroblast cellHomo sapiensKClDGUOK p.N46S;c.13_14delGC///HydEn-seq
GSM2396679-DGUOK-N46S_delGC-KOHPatient-derived fibroblast cellHomo sapiensKOHDGUOK p.N46S;c.13_14delGC///HydEn-seq
GSM2396680-TK2-M1V-KClPatient-derived fibroblast cellHomo sapiensKClTK2 p.M1V (homozygous)///HydEn-seq
GSM2396681-TK2-M1V-KOHPatient-derived fibroblast cellHomo sapiensKOHTK2 p.M1V (homozygous)///HydEn-seq
GSM2396682-TK2-Q125_M132T-KClPatient-derived fibroblast cellHomo sapiensKClTK2 p.Q125*;p.M132T///HydEn-seq
GSM2396683-TK2-Q125_M132T-KOHPatient-derived fibroblast cellHomo sapiensKOHTK2 p.Q125*;p.M132T///HydEn-seq
GSM2396684-FB1-KCl_HincIIFibroblast cellHomo sapiensKClWT///HydEn-seq
GSM2396685-FB1-KOH_HincIIFibroblast cellHomo sapiensKOHWT///HydEn-seq
GSM2396686-MPV17-Q93P-KCl_HincIIPatient-derived fibroblast cellHomo sapiensKClMPV17 p.G93P (homozygous)//restriction digest: HincIIHydEn-seq
GSM2396687-MPV17-Q93P-KOH_HincIIPatient-derived fibroblast cellHomo sapiensKOHMPV17 p.G93P (homozygous)//restriction digest: HincIIHydEn-seq
GSM2396688-TK2-Q87_N100S-KCl_HincIIPatient-derived fibroblast cellHomo sapiensKClTK2 p.Q87*;p.N100S//restriction digest: HincIIHydEn-seq
GSM2396689-TK2-Q87_N100S-KOH_HincIIPatient-derived fibroblast cellHomo sapiensKOHTK2 p.Q87*;p.N100S//restriction digest: HincIIHydEn-seq
GSM2396690-MPV17-A23P_E45D-KCl_HincIIPatient-derived fibroblast cellHomo sapiensKClMPV17 p.A23P;p.E45DfsX8//restriction digest: HincIIHydEn-seq
GSM2396691-MPV17-A23P_E45D-KOH_HincIIPatient-derived fibroblast cellHomo sapiensKOHMPV17 p.A23P;p.E45DfsX8//restriction digest: HincIIHydEn-seq
GSM2396692-DGUOK-F256-KCl_HincIIPatient-derived fibroblast cellHomo sapiensKClDGUOK p.F256* (homozygous)//restriction digest: HincIIHydEn-seq
GSM2396693-DGUOK-F256-KOH_HincIIPatient-derived fibroblast cellHomo sapiensKOHDGUOK p.F256* (homozygous)//restriction digest: HincIIHydEn-seq
GSM2396694-DGUOK-N46S_delGC-KCl_HincIIPatient-derived fibroblast cellHomo sapiensKClDGUOK p.N46S;c.13_14delGC//restriction digest: HincIIHydEn-seq
GSM2396695-DGUOK-N46S_delGC-KOH_HincIIPatient-derived fibroblast cellHomo sapiensKOHDGUOK p.N46S;c.13_14delGC//restriction digest: HincIIHydEn-seq
GSM2396696-TK2-M1V-KCl_HincIIPatient-derived fibroblast cellHomo sapiensKClTK2 p.M1V (homozygous)//restriction digest: HincIIHydEn-seq
GSM2396697-TK2-M1V-KOH_HincIIPatient-derived fibroblast cellHomo sapiensKOHTK2 p.M1V (homozygous)//restriction digest: HincIIHydEn-seq
GSM2396698-TK2-Q125_M132T-KCl_HincIIPatient-derived fibroblast cellHomo sapiensKClTK2 p.Q125*;p.M132T//restriction digest: HincIIHydEn-seq
GSM2396699-TK2-Q125_M132T-KOH_HincIIPatient-derived fibroblast cellHomo sapiensKOHTK2 p.Q125*;p.M132T//restriction digest: HincIIHydEn-seq


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