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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
PRJNA588267
PMID:
32561860
Technique Type:
MiDAS
Publication:
High-resolution mapping of mitotic DNA synthesis regions and common fragile sites in the human genome through direct sequencing
First Author:
Morgane Macheret
Last Author:
Thanos D Halazonetis
Year:
2020
Journal:
Cell Research
Access Link:
Samples ( 29 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| SRX7294478-U2OS_mainMIDAS_aph0_4 | U2OS | Homo sapiens | Aphidicolin | / | / | / | / | MiDAS | |
| SRX7294479-U2OS_mainMIDAS_aph0_6 | U2OS | Homo sapiens | Aphidicolin | / | / | / | / | MiDAS | |
| SRX7294480-U2OS_Thy_R08h | U2OS | Homo sapiens | Thymidine + release | / | / | / | / | MiDAS | |
| SRX7294481-U2OS_Thy_R10h | U2OS | Homo sapiens | Thymidine + release | / | / | / | / | MiDAS | |
| SRX7294482-U2OS_Thy_R12h | U2OS | Homo sapiens | Thymidine + release | / | / | / | / | MiDAS | |
| SRX7294483-U2OS_Thy_R12hAph | U2OS | Homo sapiens | Thymidine + Aphidicolin release | / | / | / | / | MiDAS | |
| SRX7294484-U2OS_Thy_R16hAph | U2OS | Homo sapiens | Thymidine + Aphidicolin release | / | / | / | / | MiDAS | |
| SRX7294485-U2OS_Thy_R20hAph | U2OS | Homo sapiens | Thymidine + Aphidicolin release | / | / | / | / | MiDAS | |
| SRX7294486-U2OS_Thy_R24hAph | U2OS | Homo sapiens | Thymidine + Aphidicolin release | / | / | / | / | MiDAS | |
| SRX7294487-U2OS_Thy_R08hRO3306 | U2OS | Homo sapiens | Thymidine + RO3306 release | / | / | / | / | MiDAS | |
| SRX7294488-U2OS_Thy_R10hRO3306 | U2OS | Homo sapiens | Thymidine + RO3306 release | / | / | / | / | MiDAS | |
| SRX7294489-U2OS_Thy_R12hRO3306 | U2OS | Homo sapiens | Thymidine + RO3306 release | / | / | / | / | MiDAS | |
| SRX7294490-U2OS_altMIDAS_aph0_4 | U2OS | Homo sapiens | Aphidicolin | / | / | / | / | MiDAS | |
| SRX7294491-U2OS_Thy_R16hRO3306 | U2OS | Homo sapiens | Thymidine + RO3306 release | / | / | / | / | MiDAS | |
| SRX7294492-U2OS_Thy_R12hAphRO3306 | U2OS | Homo sapiens | Thymidine + (Aphidicolin + RO3306) release | / | / | / | / | MiDAS | |
| SRX7294493-U2OS_Thy_R16hAphRO3306 | U2OS | Homo sapiens | Thymidine + (Aphidicolin + RO3306) release | / | / | / | / | MiDAS | |
| SRX7294494-U2OS_Thy_R20hAphRO3306 | U2OS | Homo sapiens | Thymidine + (Aphidicolin + RO3306) release | / | / | / | / | MiDAS | |
| SRX7294495-U2OS_Thy_R24hAphRO3306 | U2OS | Homo sapiens | Thymidine + (Aphidicolin + RO3306) release | / | / | / | / | MiDAS | |
| SRX7294496-HELA_Thy_R16hAphRO3306 | HeLa | Homo sapiens | Thymidine + (Aphidicolin + RO3306) release | / | / | / | / | MiDAS | |
| SRX7294497-U2OS_EdUseq_ctrl | U2OS | Homo sapiens | Hydroxyurea | control siRNA | / | / | / | EdU-seq | |
| SRX7294498-U2OS_EdUseq_RIF1siRNA_a | U2OS | Homo sapiens | Hydroxyurea | RIF1 siRNA | / | / | / | EdU-seq | |
| SRX7294499-U2OS_EdUseq_RIF1siRNA_b | U2OS | Homo sapiens | Hydroxyurea | RIF1 siRNA | / | / | / | EdU-seq | |
| SRX7294501-U2OS_altMIDAS | U2OS | Homo sapiens | / | / | / | / | / | MiDAS | |
| SRX7294504-HELA_mainMIDAS_aph0_4_rep1_a | HeLa | Homo sapiens | Aphidicolin | / | / | / | / | MiDAS | |
| SRX7294505-HELA_mainMIDAS_aph0_4_rep1_b | HeLa | Homo sapiens | Aphidicolin | / | / | / | / | MiDAS | |
| SRX7294506-HELA_mainMIDAS_aph0_4_rep2 | HeLa | Homo sapiens | Aphidicolin | / | / | / | / | MiDAS | |
| SRX7294507-HS68_mainMIDAS_aph0_4_a | HS68 | Homo sapiens | Aphidicolin | / | / | / | / | MiDAS | |
| SRX7294508-HS68_mainMIDAS_aph0_4_b | HS68 | Homo sapiens | Aphidicolin | / | / | / | / | MiDAS | |
| SRX7294509-U2OS_Thy_R06h | U2OS | Homo sapiens | Thymidine + release | / | / | / | / | MiDAS |
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