DNA Damage Atlas



Basic Information

Dataset ID:

  GSE108172


PMID:

  32769985


Technique Type:

  i-BLESS + ChIP-seq


Publication:

  Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites


First Author:

  Alexy Promonet


Last Author:

  Philippe Pasero


Year:

  2020


Journal:

  Nature Communications


Access Link:   

Samples ( 16 )

  Sample Name    Cell Line/Tissue    Organism    Treatment    Genotype    In-situ Treatment    Cell Phase    Bait/Targeted Break    Technique    fastqc  
GSM2891678-prpa_TOP1_IP_2_1HeLaHomo sapiensNTshTOP1///ChIP-seq (anti-RPA)
GSM2891677-prpa_TOP1_INP_2_1HeLaHomo sapiensNTshTOP1///ChIP-seq (Input)
GSM2891676-prpa_HeLa_IP_2_1HeLaHomo sapiensNTWT///ChIP-seq (anti-RPA)
GSM2891675-prpa_HeLa_INP_2_1HeLaHomo sapiensNTWT///ChIP-seq (Input)
GSM2891674-prpa_ASF_IP_2_1HeLaHomo sapiensNTshASF///ChIP-seq (anti-RPA)
GSM2891673-prpa_ASF_INP_2_1HeLaHomo sapiensNTshASF///ChIP-seq (Input)
GSM2891669-gh2ax_ASF_IP_2_1HeLaHomo sapiensDoxycyclineshASF///ChIP-seq (anti-γH2AX)
GSM2891670-gh2ax_HeLa_INP_2_1HeLaHomo sapiensDoxycyclineWT///ChIP-seq (Input)
GSM2891671-gh2ax_HeLa_IP_2_1HeLaHomo sapiensDoxycyclineWT///ChIP-seq (anti-γH2AX)
GSM2891672-gh2ax_TOP1_IP_2_1HeLaHomo sapiensDoxycyclineshTOP1///ChIP-seq (anti-γH2AX)
GSM2891682-gH2AX_U2OS_Ctrl_InpU2OSHomo sapiensDoxycyclineWT///ChIP-seq (Input)
GSM2891683-gH2AX_U2OS_Ctrl_IPU2OSHomo sapiensDoxycyclineWT///ChIP-seq (anti-γH2AX)
GSM2891684-gH2AX_U2OS_AsiS1_InpU2OSHomo sapiensDoxycyclineshASF//AsiSIChIP-seq (Input)
GSM2891685-gH2AX_U2OS_AsiS1_IPU2OSHomo sapiensDoxycyclineshASF//AsiSIChIP-seq (anti-γH2AX)
GSM4568568-B_HeLa_shTop1_S2_L002_R1_HWGLVBCXY_V2HeLaHomo sapiensNTshTOP1///i-BLESS
GSM4568567-B_HeLa_S1_L001_R1_HWGLVBCXY_V1HeLaHomo sapiensNTWT///i-BLESS


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