 |
DNA Damage Atlas |
|
|
DNA Damage Atlas |
Basic Information
Dataset ID:
GSE190735
PMID:
36046604
Technique Type:
SSiNGLe
Publication:
Hotspots of single-strand DNA "breakome" are enriched at transcriptional start sites of genes
First Author:
Huifen Cao
Last Author:
Philipp Kapranov
Year:
2022
Journal:
Frontiers in Molecular Biosciences
Access Link:
Samples ( 52 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| GSM5729919-DMSO06h_B3 | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM5729920-DMSO06h_B4 | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM5729922-DMSO12h_B3 | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM5729923-DMSO12h_B4 | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM5729925-DMSO24h_B3 | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM5729926-DMSO24h_B4 | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM5729928-DMSO36h_B3 | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM5729929-DMSO36h_B4 | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM5729931-DMSO48h_B3 | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM5729932-DMSO48h_B4 | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM5729949-ICRF_18706h_B3 | K562 | Homo sapiens | ICRF-187 | / | / | / | / | SSiNGLe | |
| GSM5729950-ICRF_18706h_B4 | K562 | Homo sapiens | ICRF-187 | / | / | / | / | SSiNGLe | |
| GSM5729951-ICRF_18712h_B3 | K562 | Homo sapiens | ICRF-187 | / | / | / | / | SSiNGLe | |
| GSM5729952-ICRF_18712h_B4 | K562 | Homo sapiens | ICRF-187 | / | / | / | / | SSiNGLe | |
| GSM5729953-ICRF_18724h_B3 | K562 | Homo sapiens | ICRF-187 | / | / | / | / | SSiNGLe | |
| GSM5729954-ICRF_18724h_B4 | K562 | Homo sapiens | ICRF-187 | / | / | / | / | SSiNGLe | |
| GSM5729955-ICRF_18736h_B3 | K562 | Homo sapiens | ICRF-187 | / | / | / | / | SSiNGLe | |
| GSM5729956-ICRF_18736h_B4 | K562 | Homo sapiens | ICRF-187 | / | / | / | / | SSiNGLe | |
| GSM5729957-ICRF_18748h_B3 | K562 | Homo sapiens | ICRF-187 | / | / | / | / | SSiNGLe | |
| GSM5729958-ICRF_18748h_B4 | K562 | Homo sapiens | ICRF-187 | / | / | / | / | SSiNGLe | |
| GSM5729969-Merbarone06h_B3 | K562 | Homo sapiens | Merbarone | / | / | / | / | SSiNGLe | |
| GSM5729970-Merbarone06h_B4 | K562 | Homo sapiens | Merbarone | / | / | / | / | SSiNGLe | |
| GSM5729971-Merbarone12h_B3 | K562 | Homo sapiens | Merbarone | / | / | / | / | SSiNGLe | |
| GSM5729972-Merbarone12h_B4 | K562 | Homo sapiens | Merbarone | / | / | / | / | SSiNGLe | |
| GSM5729973-Merbarone24h_B3 | K562 | Homo sapiens | Merbarone | / | / | / | / | SSiNGLe | |
| GSM5729974-Merbarone24h_B4 | K562 | Homo sapiens | Merbarone | / | / | / | / | SSiNGLe | |
| GSM5729975-Merbarone36h_B3 | K562 | Homo sapiens | Merbarone | / | / | / | / | SSiNGLe | |
| GSM5729976-Merbarone36h_B4 | K562 | Homo sapiens | Merbarone | / | / | / | / | SSiNGLe | |
| GSM5729977-Merbarone48h_B3 | K562 | Homo sapiens | Merbarone | / | / | / | / | SSiNGLe | |
| GSM5729978-Merbarone48h_B4 | K562 | Homo sapiens | Merbarone | / | / | / | / | SSiNGLe | |
| GSM5729994-Z_DEVD_FMK06h_B3 | K562 | Homo sapiens | Z-DEVD-FMK | / | / | / | / | SSiNGLe | |
| GSM5729995-Z_DEVD_FMK06h_B4 | K562 | Homo sapiens | Z-DEVD-FMK | / | / | / | / | SSiNGLe | |
| GSM5729996-Z_DEVD_FMK12h_B3 | K562 | Homo sapiens | Z-DEVD-FMK | / | / | / | / | SSiNGLe | |
| GSM5729997-Z_DEVD_FMK12h_B4 | K562 | Homo sapiens | Z-DEVD-FMK | / | / | / | / | SSiNGLe | |
| GSM5729998-Z_DEVD_FMK24h_B3 | K562 | Homo sapiens | Z-DEVD-FMK | / | / | / | / | SSiNGLe | |
| GSM5729999-Z_DEVD_FMK24h_B4 | K562 | Homo sapiens | Z-DEVD-FMK | / | / | / | / | SSiNGLe | |
| GSM5730000-Z_DEVD_FMK36h_B3 | K562 | Homo sapiens | Z-DEVD-FMK | / | / | / | / | SSiNGLe | |
| GSM5730001-Z_DEVD_FMK36h_B4 | K562 | Homo sapiens | Z-DEVD-FMK | / | / | / | / | SSiNGLe | |
| GSM5730002-Z_DEVD_FMK48h_B3 | K562 | Homo sapiens | Z-DEVD-FMK | / | / | / | / | SSiNGLe | |
| GSM5730003-Z_DEVD_FMK48h_B4 | K562 | Homo sapiens | Z-DEVD-FMK | / | / | / | / | SSiNGLe | |
| GSM5730014-K562untreatedB1 | K562 | Homo sapiens | NT | / | / | / | / | SSiNGLe | |
| GSM5730015-K562untreatedB2 | K562 | Homo sapiens | NT | / | / | / | / | SSiNGLe | |
| GSM5730016-K562untreatedB3 | K562 | Homo sapiens | NT | / | / | / | / | SSiNGLe | |
| GSM6323420-K562untreatedB4 | K562 | Homo sapiens | NT | / | / | / | / | SSiNGLe | |
| GSM6323421-K562untreatedB5 | K562 | Homo sapiens | NT | / | / | / | / | SSiNGLe | |
| GSM6323422-K562untreatedB6 | K562 | Homo sapiens | NT | / | / | / | / | SSiNGLe | |
| GSM6323423-K562SSiNGLe-originalB1 | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM6323424-K562SSiNGLe-originalB2 | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM6323425-K562SSiNGLe-HMW_DNAB1 | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM6323426-K562SSiNGLe-HMW_DNAB2 | K562 | Homo sapiens | DMSO | / | / | / | / | SSiNGLe | |
| GSM6323427-K562untreatedRNAB1 | K562 | Homo sapiens | NT | / | / | / | / | SSiNGLe | |
| GSM6323428-K562untreatedRNAB2 | K562 | Homo sapiens | NT | / | / | / | / | SSiNGLe |
Copyright © 2023 All Rights Reserved by Wu lab