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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
GSE74356
PMID:
26871630
Technique Type:
HTGTS
Publication:
Long Neural Genes Harbor Recurrent DNA Break Clusters in Neural Stem/Progenitor Cells
First Author:
Pei-Chi Wei
Last Author:
Bjoern Schwer
Year:
2016
Journal:
Cell
Access Link:
Dataset ID:
GSE74356
PMID:
26873106
Technique Type:
HTGTS
Publication:
Transcription-associated processes cause DNA double-strand breaks and translocations in neural stem/progenitor cells.
First Author:
Bjoern Schwer
Last Author:
Frederick W Alt
Year:
2016
Journal:
PANS
Access Link:
Samples ( 82 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| GSM1917775-ATMKO_ISceI_ExpA | Neural stem/progenitor cells | Mus musculus | Triamcinolone acetonide | ATM-/-R26I-SceI-GRc-myc25xI-SceI | / | / | 25xI-SceI-c-Myc | HTGTS | |
| GSM1917776-ATMKO_ISceI_ExpB | Neural stem/progenitor cells | Mus musculus | Triamcinolone acetonide | ATM-/-R26I-SceI-GRc-myc25xI-SceI | / | / | 25xI-SceI-c-Myc | HTGTS | |
| GSM1917777-ATMKO_ISceI_ExpC | Neural stem/progenitor cells | Mus musculus | Triamcinolone acetonide | ATM-/-R26I-SceI-GRc-myc25xI-SceI | / | / | 25xI-SceI-c-Myc | HTGTS | |
| GSM1917778-ATMKO_ISceI_ExpD | Neural stem/progenitor cells | Mus musculus | Triamcinolone acetonide | ATM-/-R26I-SceI-GRc-myc25xI-SceI | / | / | 25xI-SceI-c-Myc | HTGTS | |
| GSM1917779-p53_Chr12_sgRNA_1_ExpD_3 | NSPCs | Mus musculus | NT | p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917780-p53_Chr12_sgRNA_1_ExpD_2 | NSPCs | Mus musculus | NT | p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917781-p53_Chr12_sgRNA_1_ExpD_1 | NSPCs | Mus musculus | NT | p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917782-p53_Chr12_sgRNA_1_ExpC_2 | NSPCs | Mus musculus | NT | p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917783-p53_Chr12_sgRNA_1_ExpC_1 | NSPCs | Mus musculus | NT | p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917784-p53_Chr12_sgRNA_1_ExpB_2 | NSPCs | Mus musculus | NT | p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917785-p53_Chr12_sgRNA_1_ExpB_1 | NSPCs | Mus musculus | NT | p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917786-p53_Chr12_sgRNA_1_ExpA | NSPCs | Mus musculus | NT | p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917787-WT_Chr12_sgRNA_1_ExpA_1 | NSPCs | Mus musculus | NT | WT | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917788-WT_Chr12_sgRNA_1_ExpA_2 | NSPCs | Mus musculus | NT | WT | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917789-WT_Chr12_sgRNA_1_ExpB | NSPCs | Mus musculus | NT | WT | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917790-WT_Chr12_sgRNA_1_ExpC | NSPCs | Mus musculus | NT | WT | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917791-WT_Chr12_sgRNA_1_ExpD | NSPCs | Mus musculus | NT | WT | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917792-WT_Chr12_sgRNA_1_ExpE | NSPCs | Mus musculus | NT | WT | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917793-WT_Chr12_sgRNA_1_ExpF | NSPCs | Mus musculus | NT | WT | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917794-WT_Chr12_sgRNA_1_ExpG | NSPCs | Mus musculus | NT | WT | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917795-WT_Chr12_sgRNA_1_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | WT | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917796-WT_Chr12_sgRNA_1_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | WT | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917797-WT_Chr12_sgRNA_1_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | WT | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917798-WT_Chr12_sgRNA_1_APH_ExpD | NSPCs | Mus musculus | Aphidicolin | WT | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917799-WT_Chr12_sgRNA_1_DMSO_ExpA | NSPCs | Mus musculus | DMSO | WT | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917800-WT_Chr12_sgRNA_1_DMSO_ExpB | NSPCs | Mus musculus | DMSO | WT | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917801-WT_Chr12_sgRNA_1_DMSO_ExpC | NSPCs | Mus musculus | DMSO | WT | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917802-WT_Chr12_sgRNA_1_DMSO_ExpD | NSPCs | Mus musculus | DMSO | WT | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917803-X4p53_Chr12_sgRNA_1_ExpA | NSPCs | Mus musculus | NT | Xrcc4-/- p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917804-X4p53_Chr12_sgRNA_1_ExpB | NSPCs | Mus musculus | NT | Xrcc4-/- p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917805-X4p53_Chr12_sgRNA_1_ExpC | NSPCs | Mus musculus | NT | Xrcc4-/- p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917806-X4p53_Chr12_sgRNA_1_ExpD | NSPCs | Mus musculus | NT | Xrcc4-/- p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917807-X4p53_Chr12_sgRNA_1_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917808-X4p53_Chr12_sgRNA_1_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917809-X4p53_Chr12_sgRNA_1_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917810-X4p53_Chr12_sgRNA_1_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917811-X4p53_Chr12_sgRNA_1_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917812-X4p53_Chr12_sgRNA_1_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr12_sgRNA_1 | HTGTS | |
| GSM1917813-X4P53_Chr12_sgRNA_2_ExpA | NSPCs | Mus musculus | NT | Xrcc4-/- p53-/- | / | / | Chr12_sgRNA_2 | HTGTS | |
| GSM1917814-X4P53_Chr12_sgRNA_2_ExpB | NSPCs | Mus musculus | NT | Xrcc4-/- p53-/- | / | / | Chr12_sgRNA_2 | HTGTS | |
| GSM1917815-X4P53_Chr12_sgRNA_2_ExpC | NSPCs | Mus musculus | NT | Xrcc4-/- p53-/- | / | / | Chr12_sgRNA_2 | HTGTS | |
| GSM1917816-p53_Chr15_Myc_sgRNA_ExpA | NSPCs | Mus musculus | NT | p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917817-p53_Chr15_Myc_sgRNA_ExpB_1 | NSPCs | Mus musculus | NT | p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917818-p53_Chr15_Myc_sgRNA_ExpB_2 | NSPCs | Mus musculus | NT | p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917819-p53_Chr15_Myc_sgRNA_ExpC_1 | NSPCs | Mus musculus | NT | p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917820-p53_Chr15_Myc_sgRNA_ExpC_2 | NSPCs | Mus musculus | NT | p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917821-p53_Chr15_Myc_sgRNA_ExpD_1 | NSPCs | Mus musculus | NT | p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917822-p53_Chr15_Myc_sgRNA_ExpD_2 | NSPCs | Mus musculus | NT | p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917823-WT_Chr15_Myc_sgRNA_ExpA_1 | NSPCs | Mus musculus | NT | WT | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917824-WT_Chr15_Myc_sgRNA_ExpA_2 | NSPCs | Mus musculus | NT | WT | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917825-WT_Chr15_Myc_sgRNA_ExpB | NSPCs | Mus musculus | NT | WT | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917826-WT_Chr15_Myc_sgRNA_ExpC | NSPCs | Mus musculus | NT | WT | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917827-WT_Chr15_Myc_sgRNA_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | WT | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917828-WT_Chr15_Myc_sgRNA_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | WT | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917829-WT_Chr15_Myc_sgRNA_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | WT | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917830-WT_Chr15_Myc_sgRNA_APH_ExpD | NSPCs | Mus musculus | Aphidicolin | WT | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917831-WT_Chr15_Myc_sgRNA_APH_ExpE | NSPCs | Mus musculus | Aphidicolin | WT | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917832-WT_Chr15_Myc_sgRNA_DMSO_ExpA | NSPCs | Mus musculus | DMSO | WT | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917833-WT_Chr15_Myc_sgRNA_DMSO_ExpB | NSPCs | Mus musculus | DMSO | WT | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917834-WT_Chr15_Myc_sgRNA_DMSO_ExpC | NSPCs | Mus musculus | DMSO | WT | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917835-WT_Chr15_Myc_sgRNA_DMSO_ExpD | NSPCs | Mus musculus | DMSO | WT | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917836-WT_Chr15_Myc_sgRNA_DMSO_ExpE | NSPCs | Mus musculus | DMSO | WT | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917837-X4p53_Chr15_Myc_sgRNA_ExpA | NSPCs | Mus musculus | NT | Xrcc4-/- p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917838-X4p53_Chr15_Myc_sgRNA_ExpB | NSPCs | Mus musculus | NT | Xrcc4-/- p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917839-X4p53_Chr15_Myc_sgRNA_ExpC | NSPCs | Mus musculus | NT | Xrcc4-/- p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917840-X4p53_Chr15_Myc_sgRNA_ExpD | NSPCs | Mus musculus | NT | Xrcc4-/- p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917841-X4p53_Chr15_Myc_SgRNA_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917842-X4p53_Chr15_Myc_SgRNA_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917843-X4p53_Chr15_Myc_SgRNA_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917844-X4p53_Chr15_Myc_sgRNA_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917845-X4p53_Chr15_Myc_sgRNA_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917846-X4p53_Chr15_Myc_sgRNA_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr15_Myc_sgRNA | HTGTS | |
| GSM1917847-X4p53_Chr16_sgRNA_1_ExpA | NSPCs | Mus musculus | NT | Xrcc4-/- p53-/- | / | / | Chr16_sgRNA_1 | HTGTS | |
| GSM1917848-X4p53_Chr16_sgRNA_1_ExpB | NSPCs | Mus musculus | NT | Xrcc4-/- p53-/- | / | / | Chr16_sgRNA_1 | HTGTS | |
| GSM1917849-X4p53_Chr16_sgRNA_1_ExpC | NSPCs | Mus musculus | NT | Xrcc4-/- p53-/- | / | / | Chr16_sgRNA_1 | HTGTS | |
| GSM1917850-X4p53_Chr16_sgRNA_2_APH_ExpA | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr16_sgRNA_2 | HTGTS | |
| GSM1917851-X4p53_Chr16_sgRNA_2_APH_ExpB | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr16_sgRNA_2 | HTGTS | |
| GSM1917852-X4p53_Chr16_sgRNA_2_APH_ExpC | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr16_sgRNA_2 | HTGTS | |
| GSM1917853-X4p53_Chr16_sgRNA_2_APH_ExpD | NSPCs | Mus musculus | Aphidicolin | Xrcc4-/- p53-/- | / | / | Chr16_sgRNA_2 | HTGTS | |
| GSM1917854-X4p53_Chr16_sgRNA_2_DMSO_ExpA | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr16_sgRNA_2 | HTGTS | |
| GSM1917855-X4p53_Chr16_sgRNA_2_DMSO_ExpB | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr16_sgRNA_2 | HTGTS | |
| GSM1917856-X4p53_Chr16_sgRNA_2_DMSO_ExpC | NSPCs | Mus musculus | DMSO | Xrcc4-/- p53-/- | / | / | Chr16_sgRNA_2 | HTGTS |
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