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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
GSE93038
PMID:
31110352
Technique Type:
BLISS + ChIP-seq
Publication:
Release of paused RNA polymerase II at specific loci favors DNA double-strand-break formation and promotes cancer translocations
First Author:
Gaetano Ivan Dellino
Last Author:
Pier Giuseppe Pelicci
Year:
2019
Journal:
Nature Genetics
Access Link:
Samples ( 18 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| GSM2442934-MCF10AsiSIER_4OHT2h_NBS1_rep1_chip | MCF-10A | Homo sapiens | 4-Hydroxytamoxifen | MCF10A-AsiSIER | / | / | AsiSI | ChIP-seq (anti-NBS1) | |
| GSM2442935-MCF10AsiSIER_4OHT2h_NBS1_rep2_chip | MCF-10A | Homo sapiens | 4-Hydroxytamoxifen | MCF10A-AsiSIER | / | / | AsiSI | ChIP-seq (anti-NBS1) | |
| GSM2442936-MCF10AsiSIER_4OHT2h_RAD51_chip | MCF-10A | Homo sapiens | 4-Hydroxytamoxifen | MCF10A-AsiSIER | / | / | AsiSI | ChIP-seq (anti-RAD51) | |
| GSM2442938-MCF10AsiSIER_4OHT2h_gH2AX_chip | MCF-10A | Homo sapiens | 4-Hydroxytamoxifen | MCF10A-AsiSIER | / | / | AsiSI | ChIP-seq (anti-γH2AX) | |
| GSM2442939-MCF10AsiSIER_INPUT_chip | MCF-10A | Homo sapiens | NT | MCF10A-AsiSIER | / | / | AsiSI | ChIP-seq (Input) | |
| GSM2442943-MCF10AsiSIER_NT_NBS1_chip | MCF-10A | Homo sapiens | NT | MCF10A-AsiSIER | / | / | AsiSI | ChIP-seq (anti-NBS1) | |
| GSM2442945-MCF10AsiSIER_NT_RAD51_chip | MCF-10A | Homo sapiens | NT | MCF10A-AsiSIER | / | / | AsiSI | ChIP-seq (anti-RAD51) | |
| GSM2442948-MCF10AsiSIER_NT_gH2AX_chip | MCF-10A | Homo sapiens | NT | MCF10A-AsiSIER | / | / | AsiSI | ChIP-seq (anti-γH2AX) | |
| GSM3182663-MCF10AsiSIER_4OHT2h_XRCC4_chip | MCF-10A | Homo sapiens | 4-Hydroxytamoxifen | MCF10A-AsiSIER | / | / | AsiSI | ChIP-seq (anti-XRCC4) | |
| GSM3182664-MCF10AsiSIER_NT_XRCC4_chip | MCF-10A | Homo sapiens | NT | MCF10A-AsiSIER | / | / | AsiSI | ChIP-seq (anti-XRCC4) | |
| GSM3182666-MCF10AsiSIER_NT_PARP1_chip | MCF-10A | Homo sapiens | NT | MCF10A-AsiSIER | / | / | AsiSI | ChIP-seq (anti-PARP1) | |
| GSM3182668-MCF10AsiSIER_DRB_XRCC4_chip | MCF-10A | Homo sapiens | DRB | MCF10A-AsiSIER | / | / | AsiSI | ChIP-seq (anti-XRCC4) | |
| GSM3182669-MCF10AsiSIER_washout_after_DRB_XRCC4_chip | MCF-10A | Homo sapiens | DRB + wash out | MCF10A-AsiSIER | / | / | AsiSI | ChIP-seq (anti-XRCC4) | |
| GSM2442929-MCF10AsiSIER_4OHT2h_BLISS_rep1 | MCF-10A | Homo sapiens | 4-Hydroxytamoxifen | MCF10A-AsiSIER | / | / | AsiSI | BLISS | |
| GSM2442930-MCF10AsiSIER_4OHT2h_BLISS_rep2 | MCF-10A | Homo sapiens | 4-Hydroxytamoxifen | MCF10A-AsiSIER | / | / | AsiSI | BLISS | |
| GSM2442931-MCF10AsiSIER_4OHT2h_BLISS_rep3 | MCF-10A | Homo sapiens | 4-Hydroxytamoxifen | MCF10A-AsiSIER | / | / | AsiSI | BLISS | |
| GSM2442932-MCF10AsiSIER_NT_BLISS_rep1 | MCF-10A | Homo sapiens | NT | MCF10A-AsiSIER | / | / | AsiSI | BLISS | |
| GSM2442933-MCF10AsiSIER_NT_BLISS_rep2 | MCF-10A | Homo sapiens | NT | MCF10A-AsiSIER | / | / | AsiSI | BLISS |
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