DNA Damage Atlas





Basic Information

Dataset ID:

  GSE57283


PMID:

  25503383


Technique Type:

  LAM-HTGTS


Publication:

  Genome-wide detection of DNA double-stranded breaks induced by engineered nucleases


First Author:

  Richard L Frock


Last Author:

  Frederick W Alt


Year:

  2015


Journal:

  Nature Biotechnology


Access Link:   


Samples ( 108 )

  Sample Name    Cell Line/Tissue    Organism    Treatment    Genotype    In-situ Treatment    Cell Phase    Bait/Targeted Break    Technique    fastqc  
GSM1378412-Cas9_RAG1A_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//RAG1LAM-HTGTS
GSM1378413-Cas9_RAG1A_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//RAG1LAM-HTGTS
GSM1378414-Cas9_RAG1A_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//RAG1LAM-HTGTS
GSM1378415-Cas9_RAG1A_SRep4293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//RAG1LAM-HTGTS
GSM1378416-Cas9_RAG1A_SRep5293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//RAG1LAM-HTGTS
GSM1378417-Cas9_RAG1A_SRep6293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//RAG1LAM-HTGTS
GSM1378418-Cas9_RAG1AplusIR_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1A;ionizing radiationWT//RAG1LAM-HTGTS
GSM1378419-Cas9_RAG1AplusIR_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1A;ionizing radiationWT//RAG1LAM-HTGTS
GSM1378420-Cas9_RAG1AplusIR_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1A;ionizing radiationWT//RAG1LAM-HTGTS
GSM1378421-Cas9_RAG1A_OTChr19_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//DAZAPLAM-HTGTS
GSM1378422-Cas9_RAG1A_OTChr19_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//DAZAPLAM-HTGTS
GSM1378423-Cas9_RAG1A_OTChr19_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//DAZAPLAM-HTGTS
GSM1378424-Cas9_RAG1A_OTChr19plusIR_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1A;ionizing radiationWT//DAZAPLAM-HTGTS
GSM1378425-Cas9_RAG1A_OTChr19plusIR_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1A;ionizing radiationWT//DAZAPLAM-HTGTS
GSM1378426-Cas9_RAG1A_OTChr19plusIR_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1A;ionizing radiationWT//DAZAPLAM-HTGTS
GSM1378427-Cas9_RAG1A_OTChr12_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//47.0mbLAM-HTGTS
GSM1378428-Cas9_RAG1A_OTChr12_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//47.0mbLAM-HTGTS
GSM1378429-Cas9_RAG1A_OTChr12_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//47.0mbLAM-HTGTS
GSM1378430-Cas9_RAG1A_OTChr12plusIR_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1A;ionizing radiationWT//47.0mbLAM-HTGTS
GSM1378431-Cas9_RAG1A_OTChr12plusIR_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1A;ionizing radiationWT//47.0mbLAM-HTGTS
GSM1378432-Cas9_RAG1A_OTChr12plusIR_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1A;ionizing radiationWT//47.0mbLAM-HTGTS
GSM1378433-Cas9_RAG1B_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1BWT//RAG1LAM-HTGTS
GSM1378434-Cas9_RAG1B_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1BWT//RAG1LAM-HTGTS
GSM1378435-Cas9_RAG1B_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1BWT//RAG1LAM-HTGTS
GSM1378436-Cas9_RAG1B_SRep4293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1BWT//RAG1LAM-HTGTS
GSM1378437-Cas9_RAG1B_SRep5293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1BWT//RAG1LAM-HTGTS
GSM1378438-Cas9_RAG1B_SRep6293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1BWT//RAG1LAM-HTGTS
GSM1378439-Cas9_RAG1BplusISceI_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B+ISceIWT//RAG1LAM-HTGTS
GSM1378440-Cas9_RAG1BplusISceI_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B+ISceIWT//RAG1LAM-HTGTS
GSM1378441-Cas9_RAG1BplusISceI_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B+ISceIWT//RAG1LAM-HTGTS
GSM1378442-Cas9_RAG1BplusATM_TALEN_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B+ATM_TALENWT//RAG1LAM-HTGTS
GSM1378443-Cas9_RAG1BplusMYC_TALEN_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B+ATM_TALENWT//RAG1LAM-HTGTS
GSM1378444-Cas9_RAG1BplusMYC_TALEN_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B+ATM_TALENWT//RAG1LAM-HTGTS
GSM1378445-Cas9_RAG1BplusMYC_TALEN_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B+ATM_TALENWT//RAG1LAM-HTGTS
GSM1378446-Cas9_RAG1C_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1CWT//RAG1LAM-HTGTS
GSM1378447-Cas9_RAG1C_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1CWT//RAG1LAM-HTGTS
GSM1378448-Cas9_RAG1C_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1CWT//RAG1LAM-HTGTS
GSM1378449-Cas9_RAG1C_SRep4293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1CWT//RAG1LAM-HTGTS
GSM1378450-Cas9_RAG1C_SRep5293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1CWT//RAG1LAM-HTGTS
GSM1378451-Cas9_RAG1C_SRep6293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1CWT//RAG1LAM-HTGTS
GSM1378452-Cas9_RAG1D_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9n:RAG1DWT//RAG1LAM-HTGTS
GSM1378453-Cas9_RAG1D_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9n:RAG1DWT//RAG1LAM-HTGTS
GSM1378454-Cas9_RAG1D_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9n:RAG1DWT//RAG1LAM-HTGTS
GSM1378455-Cas9_RAG1D_SRep4293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9n:RAG1DWT//RAG1LAM-HTGTS
GSM1378456-Cas9_RAG1D_SRep5293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9n:RAG1DWT//RAG1LAM-HTGTS
GSM1378457-Cas9_RAG1D_SRep6293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9n:RAG1DWT//RAG1LAM-HTGTS
GSM1378458-Cas9n_RAG1A-G_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9n:RAG1A/GWT//RAG1LAM-HTGTS
GSM1378459-Cas9n_RAG1A-G_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9n:RAG1A/GWT//RAG1LAM-HTGTS
GSM1378460-Cas9n_RAG1A-G_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9n:RAG1A/GWT//RAG1LAM-HTGTS
GSM1378461-Cas9n_RAG1A-G_SRep4293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9n:RAG1A/GWT//RAG1LAM-HTGTS
GSM1378462-Cas9n_RAG1A-G_SRep5293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9n:RAG1A/GWT//RAG1LAM-HTGTS
GSM1378463-Cas9n_RAG1A-G_SRep6293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9n:RAG1A/GWT//RAG1LAM-HTGTS
GSM1378464-Cas9n_RAG1A-E_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9n:RAG1A/EWT//RAG1LAM-HTGTS
GSM1378465-Cas9n_RAG1A-E_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9n:RAG1A/EWT//RAG1LAM-HTGTS
GSM1378466-Cas9n_RAG1A-F_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9n:RAG1A/EWT//RAG1LAM-HTGTS
GSM1378467-Cas9n_RAG1A-F_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9n:RAG1A/EWT//RAG1LAM-HTGTS
GSM1378468-ATM_TALEN_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: ATM_TALENWT//ATMLAM-HTGTS
GSM1378469-MYC_TALEN_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: MYC_TALENWT//MYCLAM-HTGTS
GSM1499693-Cas9_RAG1A24hrs_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//RAG1LAM-HTGTS
GSM1499694-Cas9_RAG1A24hrs_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//RAG1LAM-HTGTS
GSM1499695-Cas9_RAG1A96hrs_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//RAG1LAM-HTGTS
GSM1499696-Cas9_RAG1A96hrs_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//RAG1LAM-HTGTS
GSM1499697-Cas9_RAG1A_OTChr7_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//103.6MbLAM-HTGTS
GSM1499698-Cas9_RAG1A_OTChr7_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//103.6MbLAM-HTGTS
GSM1499699-Cas9_RAG1A_OTChr7_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1AWT//103.6MbLAM-HTGTS
GSM1499700-Cas9_RAG1BplusIR_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B;ionizing radiationWT//RAG1LAM-HTGTS
GSM1499701-Cas9_RAG1BplusIR_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B;ionizing radiationWT//RAG1LAM-HTGTS
GSM1499702-Cas9_RAG1BplusIR_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B;ionizing radiationWT//RAG1LAM-HTGTS
GSM1499703-Cas9_RAG1B_A549_SRep1aA549Homo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1BWT//RAG1LAM-HTGTS
GSM1499704-Cas9_RAG1B_A549_SRep1bA549Homo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1BWT//RAG1LAM-HTGTS
GSM1499705-Cas9_RAG1B_A549_SRep2A549Homo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1BWT//RAG1LAM-HTGTS
GSM1499706-Cas9_RAG1BplusCas9_EMX1_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B+Cas9:EMX1WT//RAG1LAM-HTGTS
GSM1499707-Cas9_RAG1BplusCas9_EMX1_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B+Cas9:EMX1WT//RAG1LAM-HTGTS
GSM1499708-Cas9_RAG1BplusCas9_EMX1_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B+Cas9:EMX1WT//RAG1LAM-HTGTS
GSM1499709-Cas9_RAG1BplusCas9_VEGFA_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B+Cas9:VEGFAWT//RAG1LAM-HTGTS
GSM1499710-Cas9_RAG1BplusCas9_VEGFA_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B+Cas9:VEGFAWT//RAG1LAM-HTGTS
GSM1499711-Cas9_RAG1BplusCas9_VEGFA_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B+Cas9:VEGFAWT//RAG1LAM-HTGTS
GSM1499712-Cas9_RAG1BplusATM_TALEN_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B+ATM_TALENWT//RAG1LAM-HTGTS
GSM1499713-Cas9_RAG1BplusATM_TALEN_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B+ATM_TALENWT//RAG1LAM-HTGTS
GSM1499714-ATM_TALEN_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: ATM_TALENWT//ATMLAM-HTGTS
GSM1499715-ATM_TALEN_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: ATM_TALENWT//ATMLAM-HTGTS
GSM1499716-MYC_TALEN_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: MYC_TALENWT//MYCLAM-HTGTS
GSM1499717-MYC_TALEN_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: MYC_TALENWT//MYCLAM-HTGTS
GSM1499718-Cas9_RAG1B_60ug_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1BWT//RAG1LAM-HTGTS
GSM1499719-Cas9_RAG1B_60ug_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1BWT//RAG1LAM-HTGTS
GSM1499720-Cas9_RAG1B_100ug_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1BWT//RAG1LAM-HTGTS
GSM1499721-Cas9_RAG1B_100ug_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1BWT//RAG1LAM-HTGTS
GSM1499722-Cas9_RAG1B_150ug_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1BWT//RAG1LAM-HTGTS
GSM1499723-Cas9_RAG1B_150ug_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1BWT//RAG1LAM-HTGTS
GSM1499724-ATM_TALEN_1ugplusCas9_RAG1B_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: ATM_TALEN;RAG1BWT//ATMLAM-HTGTS
GSM1499725-ATM_TALEN_1ugplusCas9_RAG1B_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: ATM_TALEN;RAG1BWT//ATMLAM-HTGTS
GSM1499726-ATM_TALEN_1ugplusCas9_RAG1B_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: ATM_TALEN;RAG1BWT//ATMLAM-HTGTS
GSM1499727-ATM_TALEN_3ugplusCas9_RAG1B_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: ATM_TALEN;RAG1BWT//ATMLAM-HTGTS
GSM1499728-ATM_TALEN_3ugplusCas9_RAG1B_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: ATM_TALEN;RAG1BWT//ATMLAM-HTGTS
GSM1499729-ATM_TALEN_3ugplusCas9_RAG1B_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: ATM_TALEN;RAG1BWT//ATMLAM-HTGTS
GSM1499730-ATM_TALEN_10ugplusCas9_RAG1B_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: ATM_TALEN;RAG1BWT//ATMLAM-HTGTS
GSM1499731-ATM_TALEN_10ugplusCas9_RAG1B_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: ATM_TALEN;RAG1BWT//ATMLAM-HTGTS
GSM1499732-ATM_TALEN_10ugplusCas9_RAG1B_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: ATM_TALEN;RAG1BWT//ATMLAM-HTGTS
GSM1499733-Cas9_RAG1BplusATM_TALEN_1ug_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B;ATM_TALENWT//RAG1LAM-HTGTS
GSM1499734-Cas9_RAG1BplusATM_TALEN_1ug_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B;ATM_TALENWT//RAG1LAM-HTGTS
GSM1499735-Cas9_RAG1BplusATM_TALEN_3ug_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B;ATM_TALENWT//RAG1LAM-HTGTS
GSM1499736-Cas9_RAG1BplusATM_TALEN_3ug_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B;ATM_TALENWT//RAG1LAM-HTGTS
GSM1499737-Cas9_RAG1BplusATM_TALEN_3ug_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B;ATM_TALENWT//RAG1LAM-HTGTS
GSM1499738-Cas9_RAG1BplusATM_TALEN_10ug_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B;ATM_TALENWT//RAG1LAM-HTGTS
GSM1499739-Cas9_RAG1BplusATM_TALEN_10ug_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B;ATM_TALENWT//RAG1LAM-HTGTS
GSM1499740-Cas9_RAG1BplusATM_TALEN_10ug_SRep3293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B;ATM_TALENWT//RAG1LAM-HTGTS
GSM1499741-Cas9_RAG1BplusATM_TALEN_100ug_SRep1293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B;ATM_TALENWT//RAG1LAM-HTGTS
GSM1499742-Cas9_RAG1BplusATM_TALEN_100ug_SRep2293THomo sapiensCaPO4 transfection;nuclease delivery: Cas9:RAG1B;ATM_TALENWT//RAG1LAM-HTGTS


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