DNA Damage Atlas

  Showing page: 13

 Total Page: 14 Total entries: 263



    

Dataset IDTechnique TypePublicationLast AuthorYearJournalSamples
PRJNA326246END-seqDNA Breaks and End Resection Measured Genome-wide by End SequencingAndré Nussenzweig2016Molecular Cell45
PRJNA419068iBLESSi-BLESS is an ultra-sensitive method for detection of DNA double-strand breaksKrzysztof Ginalski2018Communications Biology22
PRJNA419220qDSB-seqqDSB-Seq is a general method for genome-wide quantification of DNA double-strand breaks using sequencingMaga Rowicka2019Nature Communications14
PRJNA448166UPD-seqGenome-wide mapping of regions preferentially targeted by the human DNA-cytosine deaminase APOBEC3A using uracil-DNA pulldown and sequencingUracil-DNA pulldown and sequencingAshok S.Bhagwat2019Journal of Biological Chemistry16
PRJNA497476DSBCaptureCNCC: an analysis tool to determine genome-wide DNA break end structure at single-nucleotide resolutionYuh-Hwa Wang2020BMC Genomics16
PRJNA509652ChIPseq + DISCOVER-seqUnbiased detection of CRISPR off-targets in vivo using DISCOVER-SeqJacob E Corn2019Science23
PRJNA548234TCR-seqUbiquitination of DNA Damage-Stalled RNAPII Promotes Transcription-Coupled RepairTomoo Ogi2020Cell109
PRJNA588267MiDASHigh-resolution mapping of mitotic DNA synthesis regions and common fragile sites in the human genome through direct sequencingThanos D Halazonetis2020Cell Research29
PRJNA608124Damage-seq + XR-seqEffects of replication domains on genome-wide UV-induced DNA damage and repairOgun Adebali2022PLoS Genetics32
PRJNA636949INDUCE-seqPrecision digital mapping of endogenous and induced genomic DNA breaks by INDUCE-seqSimon H. Reed2022Nature Communications32
PRJNA643848DENT-seqDENT-seq for genome-wide strand-specific identification of DNA single-strand break sites with single-nucleotide resolutionPaul C. Blainey2020Genome Research1
PRJNA668241HTGTS + PEM-seqC‐terminal deletion‐induced condensation sequesters AID from IgH targets in immunodeficiencyJiazhi Hu2022EMBO Journal21
PRJNA728500Ucaps-seqUdgX-Mediated Uracil Sequencing at Single-Nucleotide ResolutionYi-Han Chen2022Journal of the American Chemical Society22
PRJNA733683ChIP-seqMassively parallel genomic perturbations with multi-target CRISPR interrogates Cas9 activity and DNA repair at endogenous sitesTaekjip Ha2022Nature Cell Biology91
PRJNA750873XR-seqGenome-wide Excision Repair Map of Cyclobutane Pyrimidine Dimers in Arabidopsis and the Roles of CSA1 and CSA2 Proteins in Transcription-coupled RepairAziz Sancar2022Photochem Photobiol6
PRJNA758251PEM-seqRAG2 abolishes RAG1 aggregation to facilitate V(D)J recombinationJiazhi Hu2021Cell Report45
PRJNA804872ATL-XR-seq + XR-seqA new technique for genome-wide mapping of nucleotide excision repair without immunopurification of damaged DNAJinchuan Hu2022Journal of Biological Chemistry16
PRJNA853537Damage-seqQuantification and Mapping of Alkylation in the Human Genome Reveal Single Nucleotide Resolution Precursors of Mutational SignaturesShana J Sturla2023ACS Central Science18
SRP018506BLESSNucleotide-resolution DNA double-strand break mapping by next-generation sequencingIvan Dikic2013Nature Methods6
SRP099132BLISSBLISS is a versatile and quantitative method for genome-wide profiling of DNA double-strand breaksNicola Crosetto2017Nature Communications176

 Show 

 entries each page.  Jump to page  

first page | previous page | next page | last page




Copyright © 2023 All Rights Reserved by Wu lab