DNA Damage Atlas





Basic Information

Dataset ID:

  PRJNA548234


PMID:

  32142649


Technique Type:

  TCR-seq


Publication:

  Ubiquitination of DNA Damage-Stalled RNAPII Promotes Transcription-Coupled Repair


First Author:

  Yuka Nakazawa


Last Author:

  Tomoo Ogi


Year:

  2020


Journal:

  Cell


Access Link:   


Samples ( 109 )

  Sample Name    Cell Line/Tissue    Organism    Treatment    Genotype    In-situ Treatment    Cell Phase    Bait/Targeted Break    Technique    fastqc  
SRX6479601-HeLa_WT_7J_1h_3E10_2HeLaHomo sapiensUVCWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479602-HeLa_WT_7J_3h_3E10_1HeLaHomo sapiensUVCWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479603-HeLa_WT_0J_0h_3E10_2HeLaHomo sapiensNTWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479604-HeLa_WT_7J_5m_3E10_1HeLaHomo sapiensUVCWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479605-HeLa_WT_7J_12h_3E8_1HeLaHomo sapiensUVCWT///TCR-seq (anti-total RPB1)
SRX6479606-HeLa_WT_7J_6h_3E8_1HeLaHomo sapiensUVCWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479607-HeLa_WT_7J_3h_3E8_1HeLaHomo sapiensUVCWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479608-HeLa_CSB_0J_0h_A304-405A_1HeLaHomo sapiensNTΔCSB///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479609-HeLa_CSA_7J_12h_A304-405A_1HeLaHomo sapiensUVCΔCSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479610-HeLa_CSA_7J_6h_A304-405A_1HeLaHomo sapiensUVCΔCSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479611-HeLa_CSA_7J_3h_A304-405A_1HeLaHomo sapiensUVCΔCSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479612-HeLa_WT_7J_30m_3E10_1HeLaHomo sapiensUVCWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479613-HeLa_WT_7J_1h_3E10_1HeLaHomo sapiensUVCWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479614-HeLa_RPB1-K1268R_7J_12h_3E10_1HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479615-HeLa_RPB1-K1268R_7J_12h_3E10_2HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479616-HeLa_RPB1-K1268R_7J_12h_3E10_3HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479617-HeLa_WT_0J_0h_3E10_1HeLaHomo sapiensNTWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479618-HeLa_UVSSA_7J_12h_A304-405A_1HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479619-HeLa_RPB1-K1268R_0J_0h_A304-405A_1HeLaHomo sapiensNTRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479620-HeLa_RPB1-K1268R_7J_3h_A304-405A_1HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479621-HeLa_RPB1-K1268R_7J_6h_A304-405A_1HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479622-HeLa_CSB_7J_12h_A304-405A_1HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479623-HeLa_UVSSA_0J_0h_A304-405A_1HeLaHomo sapiensNTΔUVSSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479624-HeLa_UVSSA_7J_3h_A304-405A_1HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479625-HeLa_UVSSA_7J_6h_A304-405A_1HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-total RPB1)
SRX6479626-HeLa_RPB1-K1268R_7J_12h_A304-405A_1HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479627-HeLa_WT_0J_0h_A304-405A_1HeLaHomo sapiensNTWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479628-HeLa_WT_7J_3h_ab5095_20minPreCR_1HeLaHomo sapiensUVCWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479629-HeLa_WT_7J_3h_ab5095_2hPreCR_1HeLaHomo sapiensUVCWT///TCR-seq (anti-total RPB1)
SRX6479630-HeLa_WT_0J_0h_ab5095_1HeLaHomo sapiensNTWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479631-HeLa_WT_7J_6h_A304-405A_1HeLaHomo sapiensUVCWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479632-HeLa_WT_7J_3h_A304-405A_1HeLaHomo sapiensUVCWT///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479633-HeLa_WT_7J_3h_ab5095_1HeLaHomo sapiensUVCWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479634-HeLa_WT_7J_12h_A304-405A_1HeLaHomo sapiensUVCWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479635-HeLa_CSB_7J_6h_3E8_1HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479636-HeLa_CSB_7J_3h_3E8_1HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479637-HeLa_UVSSA_7J_12h_3E10_1HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479638-HeLa_UVSSA_7J_6h_3E10_2HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479639-HeLa_CSA_0J_0h_3E8_1HeLaHomo sapiensNTΔCSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479640-HeLa_UVSSA_7J_12h_3E10_2HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479641-HeLa_CSA_7J_6h_3E8_1HeLaHomo sapiensUVCΔCSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479642-HeLa_CSA_7J_3h_3E8_1HeLaHomo sapiensUVCΔCSA///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479643-HeLa_CSB_0J_0h_3E8_1HeLaHomo sapiensNTΔCSB///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479644-HeLa_CSA_7J_12h_3E8_1HeLaHomo sapiensUVCΔCSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479645-HeLa_RPB1-K1268R_7J_12h_3E8_1HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479646-HeLa_WT_0J_0h_3E8_1HeLaHomo sapiensNTWT///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479647-HeLa_UVSSA_7J_3h_3E8_1HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479648-HeLa_UVSSA_7J_6h_3E8_1HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479649-HeLa_CSB_7J_12h_3E8_1HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479650-HeLa_UVSSA_0J_0h_3E8_1HeLaHomo sapiensNTΔUVSSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479651-HeLa_RPB1-K1268R_7J_3h_3E8_1HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479652-HeLa_RPB1-K1268R_7J_6h_3E8_1HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479653-HeLa_UVSSA_7J_12h_3E8_1HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479654-HeLa_RPB1-K1268R_0J_0h_3E8_1HeLaHomo sapiensNTRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479655-HeLa_CSB_7J_6h_3E10_1HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479656-HeLa_CSB_7J_3h_3E10_2HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479657-HeLa_CSB_7J_3h_3E10_1HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479658-HeLa_CSB_7J_1h_3E10_2HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479659-HeLa_CSB_7J_1h_3E10_1HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479660-HeLa_CSB_7J_30m_3E10_1HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479661-HeLa_CSB_7J_5m_3E10_1HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479662-HeLa_CSB_0J_0h_3E10_2HeLaHomo sapiensNTΔCSB///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479663-HeLa_CSB_7J_12h_3E10_1HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-total RPB1)
SRX6479664-HeLa_CSB_7J_6h_3E10_2HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479665-HeLa_CSB_7J_12h_3E10_2HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-total RPB1)
SRX6479666-HeLa_UVSSA_0J_0h_3E10_1HeLaHomo sapiensNTΔUVSSA///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479667-HeLa_UVSSA_0J_0h_3E10_2HeLaHomo sapiensNTΔUVSSA///TCR-seq (anti-total RPB1)
SRX6479668-HeLa_UVSSA_7J_5m_3E10_1HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479669-HeLa_UVSSA_7J_30m_3E10_1HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-total RPB1)
SRX6479670-HeLa_UVSSA_7J_1h_3E10_1HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479671-HeLa_UVSSA_7J_1h_3E10_2HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-total RPB1)
SRX6479672-HeLa_UVSSA_7J_3h_3E10_1HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479673-HeLa_UVSSA_7J_3h_3E10_2HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479674-HeLa_UVSSA_7J_6h_3E10_1HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-total RPB1)
SRX6479675-HeLa_WT_7J_12h_3E10_3HeLaHomo sapiensUVCWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479676-HeLa_WT_7J_12h_3E10_2HeLaHomo sapiensUVCWT///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479677-HeLa_CSA_0J_0h_3E10_1HeLaHomo sapiensNTΔCSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479678-HeLa_WT_7J_12h_3E10_4HeLaHomo sapiensUVCWT///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479679-HeLa_WT_7J_6h_3E10_1HeLaHomo sapiensUVCWT///TCR-seq (anti-total RPB1)
SRX6479680-HeLa_WT_7J_3h_3E10_2HeLaHomo sapiensUVCWT///TCR-seq (anti-total RPB1)
SRX6479681-HeLa_WT_7J_12h_3E10_1HeLaHomo sapiensUVCWT///TCR-seq (anti-total RPB1)
SRX6479682-HeLa_WT_7J_6h_3E10_2HeLaHomo sapiensUVCWT///TCR-seq (anti-total RPB1)
SRX6479683-HeLa_CSA_7J_5m_3E10_1HeLaHomo sapiensUVCΔCSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479684-HeLa_CSA_0J_0h_3E10_2HeLaHomo sapiensNTΔCSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479685-HeLa_CSA_7J_6h_3E10_2HeLaHomo sapiensUVCΔCSA///TCR-seq (anti-total RPB1)
SRX6479686-HeLa_CSA_7J_12h_3E10_1HeLaHomo sapiensUVCΔCSA///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479687-HeLa_CSA_7J_3h_3E10_2HeLaHomo sapiensUVCΔCSA///TCR-seq (anti-total RPB1)
SRX6479688-HeLa_CSA_7J_6h_3E10_1HeLaHomo sapiensUVCΔCSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479689-HeLa_CSA_7J_1h_3E10_2HeLaHomo sapiensUVCΔCSA///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479690-HeLa_CSA_7J_3h_3E10_1HeLaHomo sapiensUVCΔCSA///TCR-seq (anti-total RPB1)
SRX6479691-HeLa_CSA_7J_30m_3E10_1HeLaHomo sapiensUVCΔCSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479692-HeLa_CSA_7J_1h_3E10_1HeLaHomo sapiensUVCΔCSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479693-HeLa_CSA_7J_12h_3E10_2HeLaHomo sapiensUVCΔCSA///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479694-HeLa_CSB_0J_0h_3E10_1HeLaHomo sapiensNTΔCSB///TCR-seq (anti-total RPB1)
SRX6479695-HeLa_RPB1-K1268R_7J_3h_3E10_1HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser2-CTD, Cat# ab5095)
SRX6479696-HeLa_RPB1-K1268R_7J_3h_3E10_2HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479697-HeLa_RPB1-K1268R_7J_1h_3E10_1HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-total RPB1)
SRX6479698-HeLa_RPB1-K1268R_7J_1h_3E10_2HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479699-HeLa_RPB1-K1268R_7J_5m_3E10_1HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479700-HeLa_RPB1-K1268R_7J_30m_3E10_1HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479701-HeLa_RPB1-K1268R_0J_0h_3E10_1HeLaHomo sapiensNTRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX6479702-HeLa_RPB1-K1268R_0J_0h_3E10_2HeLaHomo sapiensNTRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX6479703-HeLa_RPB1-K1268R_7J_6h_3E10_1HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-total RPB1)
SRX6479704-HeLa_RPB1-K1268R_7J_6h_3E10_2HeLaHomo sapiensUVCRPB1-K1268R///TCR-seq (anti-RPB1-phospho-Ser2-CTD, Cat# ab5095)
SRX6479705-HeLa_CSB_7J_6h_A304-405A_1HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-RPB1-phospho-Ser2-CTD, Cat# ab5095)
SRX6479706-HeLa_CSB_7J_3h_A304-405A_1HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-RPB1-phospho-Ser2-CTD, Cat# ab5095)
SRX6479707-HeLa_CSA_0J_0h_A304-405A_1HeLaHomo sapiensNTΔCSA///TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)
SRX7780621-HeLa_CSB_7J_3h_3E10_3HeLaHomo sapiensUVCΔCSB///TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)
SRX7780622-HeLa_UVSSA_7J_3h_3E10_3HeLaHomo sapiensUVCΔUVSSA///TCR-seq (anti-total RPB1)


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