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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
PRJNA326246
PMID:
27477910
Technique Type:
END-seq
Publication:
DNA Breaks and End Resection Measured Genome-wide by End Sequencing
First Author:
Andres Canela
Last Author:
André Nussenzweig
Year:
2016
Journal:
Molecular Cell
Access Link:
Samples ( 45 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| SRX1865404-END-seq-preB-LIG4 | Pre-B cell | Mus musculus | / | Lig4-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1865405-END-seq-preB-LIG4-2 | Pre-B cell | Mus musculus | / | Lig4-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1865441-END-seq-preB-LIG4-ATMi-rep1 | Pre-B cell | Mus musculus | ATM inhibitor | Lig4-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1865442-END-seq-preB-LIG4-ATMi-rep2 | Pre-B cell | Mus musculus | ATM inhibitor | Lig4-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1865443-END-seq-preB-LIG4-53BP1-rep1 | Pre-B cell | Mus musculus | / | Lig4-/- 53BP1-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1865444-END-seq-preB-LIG4-53BP1-rep2 | Pre-B cell | Mus musculus | / | Lig4-/- 53BP1-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1865445-END-seq-preB-LIG4-53BP1-ATMi-rep1 | Pre-B cell | Mus musculus | ATM inhibitor | Lig4-/- 53BP1-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1865446-END-seq-preB-LIG4-53BP1-ATMi-rep2 | Pre-B cell | Mus musculus | ATM inhibitor | Lig4-/- 53BP1-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1867517-END-seq-preB-LIG4-G1-AsiSI-ENDseq-vs-BLESS | Pre-B cell | Mus musculus | / | Lig4-/- 53BP1-/- | Exo VII + Exo T | G1 | AsiSI | END-seq | |
| SRX1867518-END-seq-preB-RAG1-rep1 | Pre-B cell | Mus musculus | / | RAG1-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1867519-END-seq-preB-RAG1-rep2 | Pre-B cell | Mus musculus | / | RAG1-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1867520-END-seq-preB-WT-cycling-AsiSI | Pre-B cell | Mus musculus | / | WT | Exo VII + Exo T | / | AsiSI | END-seq | |
| SRX1867521-END-seq-preB-WT-G1-AsiSI | Pre-B cell | Mus musculus | / | WT | Exo VII + Exo T | G1 | AsiSI | END-seq | |
| SRX1867522-END-seq-preB-RAG1-ATMi-rep1 | Pre-B cell | Mus musculus | ATM inhibitor | RAG1-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1867523-END-seq-preB-RAG1-ATMi-rep2 | Pre-B cell | Mus musculus | ATM inhibitor | RAG1-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1867524-END-seq-Bcells-ATM-resting | B cell | Mus musculus | / | ATM-/- | Exo VII + Exo T | G0 | / | END-seq | |
| SRX1867525-END-seq-preB-WT-rep1 | Pre-B cell | Mus musculus | / | WT | Exo VII + Exo T | / | / | END-seq | |
| SRX1867540-END-seq-Bcells-WT-resting | B cell | Mus musculus | / | WT | Exo VII + Exo T | G0 | / | END-seq | |
| SRX1867541-END-seq-preB-LIG4-G1-AsiSI-invitro | Pre-B cell | Mus musculus | / | Lig4-/- | Exo VII + Exo T | G1 | AsiSI | END-seq | |
| SRX1867542-END-seq-preB-LIG4-G1-AsiSI-invivo | Pre-B cell | Mus musculus | / | Lig4-/- | Exo VII + Exo T | G1 | AsiSI | END-seq | |
| SRX1867543-END-seq-preB-LIG4-dilution-experiment-NT | Pre-B cell | Mus musculus | / | Lig4-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1867544-END-seq-preB-LIG4-dilution-experiment-no-dilution | Pre-B cell | Mus musculus | / | Lig4-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1867545-END-seq-preB-WT-rep2 | Pre-B cell | Mus musculus | / | WT | Exo VII + Exo T | / | / | END-seq | |
| SRX1867546-END-seq-preB-LIG4-dilution-experiment-1-in-100 | Pre-B cell | Mus musculus | / | Lig4-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1867547-END-seq-preB-LIG4-dilution-experiment-1-in-1000 | Pre-B cell | Mus musculus | / | Lig4-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1867548-END-seq-preB-WT-ATMi-rep1 | Pre-B cell | Mus musculus | ATM inhibitor | WT | Exo VII + Exo T | / | / | END-seq | |
| SRX1867549-END-seq-preB-LIG4-dilution-experiment-1-in-10000 | Pre-B cell | Mus musculus | / | Lig4-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1867550-END-seq-preB-WT-ATMi-rep2 | Pre-B cell | Mus musculus | ATM inhibitor | WT | Exo VII + Exo T | / | / | END-seq | |
| SRX1867551-END-seq-Bcells-WT-activated | B cell | Mus musculus | / | WT | Exo VII + Exo T | / | / | END-seq | |
| SRX1867552-END-seq-thymus-ATM-rep1 | Thymus | Mus musculus | / | ATM-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1867553-END-seq-thymus-ATM-rep2 | Thymus | Mus musculus | / | ATM-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1867554-END-seq-Bcells-input | B cell | Mus musculus | / | / | Exo VII + Exo T | / | / | END-seq | |
| SRX1867555-END-seq-thymus-ATM-rep3 | Thymus | Mus musculus | / | ATM-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1867556-END-seq-thymus-RAG2-rep1 | Thymus | Mus musculus | / | RAG2-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1867557-END-seq-preB-input | Primary B cell | Mus musculus | / | / | Exo VII + Exo T | / | / | END-seq | |
| SRX1867558-END-seq-thymus-RAG2-rep2 | Thymus | Mus musculus | / | RAG2-/- | Exo VII + Exo T | / | / | END-seq | |
| SRX1867559-END-seq-thymus-input | Thymus | Mus musculus | / | / | Exo VII + Exo T | / | / | END-seq | |
| SRX1867562-END-seq-thymus-WT-rep1 | Thymus | Mus musculus | / | WT | Exo VII + Exo T | / | / | END-seq | |
| SRX1867563-END-seq-thymus-WT-rep2 | Thymus | Mus musculus | / | WT | Exo VII + Exo T | / | / | END-seq | |
| SRX1867564-END-seq-thymus-WT-rep3 | Thymus | Mus musculus | / | WT | Exo VII + Exo T | / | / | END-seq | |
| SRX1867565-END-seq-thymus-WT-rep4 | Thymus | Mus musculus | / | WT | Exo VII + Exo T | / | / | END-seq | |
| SRX1865246-ChIP-preB-RPA-LIG4-53BP1-cycling-AsiSI | Abel pre-B cell | Mus musculus | / | LIG4-/- 53BP1-/- | / | / | AsiSI | ChIP-seq (anti-RPA) | |
| SRX1867561-ChIP-preB-input | Abel pre-B cell | Mus musculus | / | / | / | / | / | ChIP-seq (Input) | |
| SRX1865406-BLESS-preB-LIG4-G1-AsiSI-ENDseq-vs-BLESS | pre-B cell | Mus musculus | / | / | / | / | / | BLESS | |
| SRX1867560-BLESS-preB-input | pre-B cell | Mus musculus | / | / | / | / | / | BLESS |
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