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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
GSE134225
PMID:
32320643
Technique Type:
Endoseq + GLOE-seq
Publication:
Genome-wide Nucleotide-Resolution Mapping of DNA Replication Patterns, Single-Strand Breaks, and Lesions by GLOE-Seq
First Author:
Annie M Sriramachandran
Last Author:
Helle D Ulrich
Year:
2020
Journal:
Molecular Cell
Access Link:
Samples ( 96 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| GSM3939048-Undigested_rep1 | / | Saccharomyces cerevisiae | NT | / | / | / | / | GLOE-seq | |
| GSM3939049-Undigested_rep2 | / | Saccharomyces cerevisiae | NT | / | / | / | / | GLOE-seq | |
| GSM3939050-BsrDI_rep1 | / | Saccharomyces cerevisiae | BsrDI | / | / | / | BsrDI | GLOE-seq | |
| GSM3939051-BsrDI_rep2 | / | Saccharomyces cerevisiae | BsrDI | / | / | / | BsrDI | GLOE-seq | |
| GSM3939052-NbBsrDI_rep1 | / | Saccharomyces cerevisiae | Nb.BsrDI | / | / | / | Nb.BsrDI | GLOE-seq | |
| GSM3939053-NbBsrDI_rep2 | / | Saccharomyces cerevisiae | Nb.BsrDI | / | / | / | Nb.BsrDI | GLOE-seq | |
| GSM3939054-NbBsrDI_rep3 | / | Saccharomyces cerevisiae | Nb.BsrDI | / | / | / | Nb.BsrDI | GLOE-seq | |
| GSM3939055-NbBsrDI_rep4 | / | Saccharomyces cerevisiae | Nb.BsrDI | / | / | / | Nb.BsrDI | GLOE-seq | |
| GSM3939056-NbBsrDI_before_fragmentation | / | Saccharomyces cerevisiae | Nb.BsrDI treated before EndoSeq | / | / | / | Nb.BsrDI | EndoSeq | |
| GSM3939057-NbBsrDI_after_fragmentation | / | Saccharomyces cerevisiae | Nb.BsrDI treated during EndoSeq | / | / | / | Nb.BsrDI | EndoSeq | |
| GSM3939058-NbBsrDI_NotI_1_10000_rep1 | / | Saccharomyces cerevisiae | 1:10000 dilution of Nb.BsrDI/NotI-treated with NotI-treated DNA | / | / | / | Nb.BsrDI + NotI | GLOE-seq | |
| GSM3939059-NbBsrDI_NotI_1_10000_rep2 | / | Saccharomyces cerevisiae | 1:10000 dilution of Nb.BsrDI/NotI-treated with NotI-treated DNA | / | / | / | Nb.BsrDI + NotI | GLOE-seq | |
| GSM3939060-NbBsrDI_NotI_1_1000_rep1 | / | Saccharomyces cerevisiae | 1:1000 dilution of Nb.BsrDI/NotI-treated with NotI-treated DNA | / | / | / | Nb.BsrDI + NotI | GLOE-seq | |
| GSM3939061-NbBsrDI_NotI_1_1000_rep2 | / | Saccharomyces cerevisiae | 1:1000 dilution of Nb.BsrDI/NotI-treated with NotI-treated DNA | / | / | / | Nb.BsrDI + NotI | GLOE-seq | |
| GSM3939062-NbBsrDI_NotI_1_100_rep1 | / | Saccharomyces cerevisiae | 1:100 dilution of Nb.BsrDI/NotI-treated with NotI-treated DNA | / | / | / | Nb.BsrDI + NotI | GLOE-seq | |
| GSM3939064-NbBsrDI_NotI_1_100_rep2 | / | Saccharomyces cerevisiae | 1:100 dilution of Nb.BsrDI/NotI-treated with NotI-treated DNA | / | / | / | Nb.BsrDI + NotI | GLOE-seq | |
| GSM3939066-NbBsrDI_NotI_1_10_rep1 | / | Saccharomyces cerevisiae | 1:10 dilution of Nb.BsrDI/NotI-treated with NotI-treated DNA | / | / | / | Nb.BsrDI + NotI | GLOE-seq | |
| GSM3939068-NbBsrDI_NotI_1_10_rep2 | / | Saccharomyces cerevisiae | 1:10 dilution of Nb.BsrDI/NotI-treated with NotI-treated DNA | / | / | / | Nb.BsrDI + NotI | GLOE-seq | |
| GSM3939070-Random_rep1 | / | Saccharomyces cerevisiae | sonicated to ca 300 bp | / | / | / | / | GLOE-seq | |
| GSM3939072-Random_rep2 | / | Saccharomyces cerevisiae | sonicated to ca 300 bp | / | / | / | / | GLOE-seq | |
| GSM3939074-NbBtsI_rep1 | / | Saccharomyces cerevisiae | Nb.BtsI | / | / | / | Nb.BtsI | GLOE-seq | |
| GSM3939075-NbBtsI_rep2 | / | Saccharomyces cerevisiae | Nb.BtsI | / | / | / | Nb.BtsI | GLOE-seq | |
| GSM3939107-WT_RAF_rep1 | / | Saccharomyces cerevisiae | growth in raffinose | WT | / | / | / | GLOE-seq | |
| GSM3939108-WT_RAF_rep2 | / | Saccharomyces cerevisiae | growth in raffinose | WT | / | / | / | GLOE-seq | |
| GSM3939109-WT_GAL_rep1 | / | Saccharomyces cerevisiae | growth in galactose | WT | / | / | / | GLOE-seq | |
| GSM3939110-WT_GAL_rep2 | / | Saccharomyces cerevisiae | growth in galactose | WT | / | / | / | GLOE-seq | |
| GSM3939111-WT0J_withEndoVApe1_rep1 | / | Saccharomyces cerevisiae | Endonuclease V/APE1 | WT | / | / | / | GLOE-seq | |
| GSM3939112-WT0J_withEndoVApe1_rep2 | / | Saccharomyces cerevisiae | Endonuclease V/APE1 | WT | / | / | / | GLOE-seq | |
| GSM3939113-WT0J_withoutEndoVApe1_rep1 | / | Saccharomyces cerevisiae | NT | WT | / | / | / | GLOE-seq | |
| GSM3939114-WT0J_withoutEndoVApe1_rep2 | / | Saccharomyces cerevisiae | NT | WT | / | / | / | GLOE-seq | |
| GSM3939115-WT20J_withEndoVApe1_rep1 | / | Saccharomyces cerevisiae | UV + Endonuclease V/APE1 | WT | / | / | / | GLOE-seq | |
| GSM3939116-WT20J_withEndoVApe1_rep2 | / | Saccharomyces cerevisiae | UV + Endonuclease V/APE1 | WT | / | / | / | GLOE-seq | |
| GSM3939117-WT20J_withoutEndoVApe1_rep1 | / | Saccharomyces cerevisiae | UV | WT | / | / | / | GLOE-seq | |
| GSM3939118-WT20J_withoutEndoVApe1_rep2 | / | Saccharomyces cerevisiae | UV | WT | / | / | / | GLOE-seq | |
| GSM3939119-WT120J_withEndoVApe1_rep1 | / | Saccharomyces cerevisiae | UV + Endonuclease V/APE1 | WT | / | / | / | GLOE-seq | |
| GSM3939120-WT120J_withEndoVApe1_rep2 | / | Saccharomyces cerevisiae | UV + Endonuclease V/APE1 | WT | / | / | / | GLOE-seq | |
| GSM3939121-WT120J_withoutEndoVApe1_rep1 | / | Saccharomyces cerevisiae | UV | WT | / | / | / | GLOE-seq | |
| GSM3939122-WT120J_withoutEndoVApe1_rep2 | / | Saccharomyces cerevisiae | UV | WT | / | / | / | GLOE-seq | |
| GSM3939123-CDC9 | / | Saccharomyces cerevisiae | / | / | / | / | / | GLOE-seq | |
| GSM3939124-cdc9_AID | / | Saccharomyces cerevisiae | / | / | / | / | / | GLOE-seq | |
| GSM3939125-WT_siCTR_rep1 | HCT116 | Homo sapiens | siRNA control | / | / | / | / | GLOE-seq | |
| GSM3939126-WT_siCTR_rep2 | HCT116 | Homo sapiens | siRNA control | / | / | / | / | GLOE-seq | |
| GSM3939127-LIG3_siLIG1_rep1 | HCT116 | Homo sapiens | LIG3-/-:mL3 + siRNA LIG1 | / | / | / | / | GLOE-seq | |
| GSM3939128-LIG3_siLIG1_rep2 | HCT116 | Homo sapiens | LIG3-/-:mL3 + siRNA LIG1 | / | / | / | / | GLOE-seq | |
| GSM4304615-UD_Apn1Apn2_0min_AAG1_rep1 | / | Saccharomyces cerevisiae | hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304616-UD_Apn1Apn2_0min_AAG1_rep2 | / | Saccharomyces cerevisiae | hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304617-UD_Apn1Apn2_0min_rep1 | / | Saccharomyces cerevisiae | NT | / | / | / | / | GLOE-seq | |
| GSM4304618-UD_Apn1Apn2_0min_rep2 | / | Saccharomyces cerevisiae | NT | / | / | / | / | GLOE-seq | |
| GSM4304619-UD_Apn1Apn2_30min_AAG1_rep1 | / | Saccharomyces cerevisiae | hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304620-UD_Apn1Apn2_30min_AAG1_rep2 | / | Saccharomyces cerevisiae | hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304621-UD_Apn1Apn2_30min_rep1 | / | Saccharomyces cerevisiae | NT | / | / | / | / | GLOE-seq | |
| GSM4304622-UD_Apn1Apn2_30min_rep2 | / | Saccharomyces cerevisiae | NT | / | / | / | / | GLOE-seq | |
| GSM4304623-UD_Apn1Apn2_75min_AAG1_rep1 | / | Saccharomyces cerevisiae | hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304624-UD_Apn1Apn2_75min_AAG1_rep2 | / | Saccharomyces cerevisiae | hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304625-UD_Apn1Apn2_75min_rep1 | / | Saccharomyces cerevisiae | NT | / | / | / | / | GLOE-seq | |
| GSM4304626-UD_Apn1Apn2_75min_rep2 | / | Saccharomyces cerevisiae | NT | / | / | / | / | GLOE-seq | |
| GSM4304627-UD_WT_0min_AAG1_rep1 | / | Saccharomyces cerevisiae | hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304628-UD_WT_0min_AAG1_rep2 | / | Saccharomyces cerevisiae | hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304629-UD_WT_0min_rep1 | / | Saccharomyces cerevisiae | NT | / | / | / | / | GLOE-seq | |
| GSM4304630-UD_WT_0min_rep2 | / | Saccharomyces cerevisiae | NT | / | / | / | / | GLOE-seq | |
| GSM4304631-UD_WT_30min_AAG1_rep1 | / | Saccharomyces cerevisiae | hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304632-UD_WT_30min_AAG1_rep2 | / | Saccharomyces cerevisiae | hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304633-UD_WT_30min_rep1 | / | Saccharomyces cerevisiae | NT | / | / | / | / | GLOE-seq | |
| GSM4304634-UD_WT_30min_rep2 | / | Saccharomyces cerevisiae | NT | / | / | / | / | GLOE-seq | |
| GSM4304635-UD_WT_75min_AAG1_rep1 | / | Saccharomyces cerevisiae | hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304636-UD_WT_75min_AAG1_rep2 | / | Saccharomyces cerevisiae | hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304637-UD_WT_75min_rep1 | / | Saccharomyces cerevisiae | NT | / | / | / | / | GLOE-seq | |
| GSM4304638-UD_WT_75min_rep2 | / | Saccharomyces cerevisiae | NT | / | / | / | / | GLOE-seq | |
| GSM4304639-Apn1Apn2_0min_AAG1_rep1 | / | Saccharomyces cerevisiae | MMS + hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304640-Apn1Apn2_0min_AAG1_rep2 | / | Saccharomyces cerevisiae | MMS + hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304641-Apn1Apn2_0min_rep1 | / | Saccharomyces cerevisiae | MMS | / | / | / | / | GLOE-seq | |
| GSM4304642-Apn1Apn2_0min_rep2 | / | Saccharomyces cerevisiae | MMS | / | / | / | / | GLOE-seq | |
| GSM4304643-Apn1Apn2_30min_AAG1_rep1 | / | Saccharomyces cerevisiae | MMS + hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304644-Apn1Apn2_30min_AAG1_rep2 | / | Saccharomyces cerevisiae | MMS + hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304645-Apn1Apn2_30min_rep1 | / | Saccharomyces cerevisiae | MMS | / | / | / | / | GLOE-seq | |
| GSM4304646-Apn1Apn2_30min_rep2 | / | Saccharomyces cerevisiae | MMS | / | / | / | / | GLOE-seq | |
| GSM4304647-Apn1Apn2_75min_AAG1_rep1 | / | Saccharomyces cerevisiae | MMS + hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304648-Apn1Apn2_75min_AAG1_rep2 | / | Saccharomyces cerevisiae | MMS + hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304649-Apn1Apn2_75min_rep1 | / | Saccharomyces cerevisiae | MMS | / | / | / | / | GLOE-seq | |
| GSM4304650-Apn1Apn2_75min_rep2 | / | Saccharomyces cerevisiae | MMS | / | / | / | / | GLOE-seq | |
| GSM4304651-WT_0min_AAG1_rep1 | / | Saccharomyces cerevisiae | MMS + hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304652-WT_0min_AAG1_rep2 | / | Saccharomyces cerevisiae | MMS + hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304653-WT_0min_rep1 | / | Saccharomyces cerevisiae | MMS | / | / | / | / | GLOE-seq | |
| GSM4304654-WT_0min_rep2 | / | Saccharomyces cerevisiae | MMS | / | / | / | / | GLOE-seq | |
| GSM4304655-WT_30min_AAG1_rep1 | / | Saccharomyces cerevisiae | MMS + hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304656-WT_30min_AAG1_rep2 | / | Saccharomyces cerevisiae | MMS + hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304657-WT_30min_rep1 | / | Saccharomyces cerevisiae | MMS | / | / | / | / | GLOE-seq | |
| GSM4304658-WT_30min_rep2 | / | Saccharomyces cerevisiae | MMS | / | / | / | / | GLOE-seq | |
| GSM4304659-WT_75min_AAG1_rep1 | / | Saccharomyces cerevisiae | MMS + hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304660-WT_75min_AAG1_rep2 | / | Saccharomyces cerevisiae | MMS + hAAG, followed by APE1 | / | / | / | / | GLOE-seq | |
| GSM4304661-WT_75min_rep1 | / | Saccharomyces cerevisiae | MMS | / | / | / | / | GLOE-seq | |
| GSM4304662-WT_75min_rep2 | / | Saccharomyces cerevisiae | MMS | / | / | / | / | GLOE-seq | |
| GSM4305465-WT_siLIG1_rep1 | HCT116 | Homo sapiens | siRNA LIG1 | / | / | / | / | GLOE-seq | |
| GSM4305466-WT_siLIG1_rep2 | HCT116 | Homo sapiens | siRNA LIG1 | / | / | / | / | GLOE-seq | |
| GSM4305467-LIG3_siCTR_rep1 | HCT116 | Homo sapiens | siRNA control | LIG3-/-:mL3 | / | / | / | GLOE-seq | |
| GSM4305468-LIG3_siCTR_rep2 | HCT116 | Homo sapiens | siRNA control | LIG3-/-:mL3 | / | / | / | GLOE-seq |
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