DNA Damage Atlas



Basic Information

Dataset ID:

  GSE202887


PMID:

  36243978


Technique Type:

  PEM-seq


Publication:

  CRISPR/Cas9-induced structural variations expand in T lymphocytes in vivo


First Author:

  Jinchun Wu


Last Author:

  Jiazhi Hu


Year:

  2022


Journal:

  Nucleic Acids Research


Access Link:   

Samples ( 24 )

  Sample Name    Cell Line/Tissue    Organism    Treatment    Genotype    In-situ Treatment    Cell Phase    Bait/Targeted Break    Technique    fastqc  
GSM6135100-1st_Activated_T_cMycSpleenMus musculusActivated by a-CD3/CD28, a-IFNg, and a-IL-4HH7-tg Cas9 CD45.1//pST-sgRNAPEM-seq
GSM6135101-1st_Effector_T_1_cMycGutMus musculusActivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6135102-1st_Effector_T_2_cMycGutMus musculusActivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6135103-1st_Effector_T_3_cMycGutMus musculusActivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6135104-1st_Effector_T_4_cMycGutMus musculusActivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6260944-3rd_Activated_T_myc6_rp1SpleenMus musculusActivated by a-CD3/CD28, a-IFNg, and a-IL-4HH7-tg Cas9 CD45.1//pST-sgRNAPEM-seq
GSM6260945-3rd_Activated_T_myc6_rp2SpleenMus musculusActivated by a-CD3/CD28, a-IFNg, and a-IL-4HH7-tg Cas9 CD45.1//pST-sgRNAPEM-seq
GSM6260946-3rd_Effector_Female_1GutMus musculusNTRag1-/- NM//pST-sgRNAPEM-seq
GSM6260947-3rd_Effector_Female_2GutMus musculusNTRag1-/- NM//pST-sgRNAPEM-seq
GSM6597245-2nd_Activated_TSpleenMus musculusactivated by a-CD3/CD28, a-IFNg, and a-IL-4HH7-tg Cas9 CD45.1///PEM-seq
GSM6597246-2nd_Eff_3weeks_5IntestineMus musculusactivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6597247-2nd_Eff_3weeks_6IntestineMus musculusactivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6597248-2nd_Eff_3weeks_7IntestineMus musculusactivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6597249-2nd_Eff_2months_8IntestineMus musculusactivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6597250-2nd_Eff_2months_9IntestineMus musculusactivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6597251-2nd_Eff_2months_10IntestineMus musculusactivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6597252-2nd_Eff_2months_11IntestineMus musculusactivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6597253-4th_Eff_Female_1IntestineMus musculusactivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6597254-4th_Eff_Female_2IntestineMus musculusactivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6597255-4th_Eff_Female_3IntestineMus musculusactivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6597256-4th_Eff_Female_4IntestineMus musculusactivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6597257-4th_Eff_Male_1IntestineMus musculusactivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6597258-4th_Eff_Male_2IntestineMus musculusactivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq
GSM6597259-4th_Eff_Male_3IntestineMus musculusactivated by a-CD3/CD28, a-IFNg, and a-IL-4Rag1-/- NM//pST-sgRNAPEM-seq


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