DNA Damage Atlas



Basic Information

Dataset ID:

  GSE115625


PMID:

  30293786


Technique Type:

  BrlTL+ ChIP-seq


Publication:

  Genome-wide Identification of Structure-Forming Repeats as Principal Sites of Fork Collapse upon ATR Inhibition


First Author:

  Nishita Shastri


Last Author:

  Eric J Brown


Year:

  2018


Journal:

  Molecular Cell


Access Link:   

Samples ( 33 )

  Sample Name    Cell Line/Tissue    Organism    Treatment    Genotype    In-situ Treatment    Cell Phase    Bait/Targeted Break    Technique    fastqc  
GSM2693327-DMSO_18h_RPAChIPSeq_rep1MEFMus musculusDMSOATR+/-///ChIP-seq (anti-RPA)
GSM2693328-DMSO_18h_RPAChIPSeq_rep2MEFMus musculusDMSOATR+/-///ChIP-seq (anti-RPA)
GSM2693329-DMSO_18h_InputMEFMus musculusDMSOATR+/-///ChIP-seq (Input)
GSM2693330-ATRi-plus-APH_18h_RPAChIPSeq_rep1MEFMus musculusATR-45 inhibitor + AphidicolinATR+/-///ChIP-seq (anti-RPA)
GSM2693331-ATRi-plus-APH_18h_RPAChIPSeq_rep2MEFMus musculusATR-45 inhibitor + AphidicolinATR+/-///ChIP-seq (anti-RPA)
GSM2693332-ATRi-plus-APH_18h_RPAChIPSeq_rep3MEFMus musculusATR-45 inhibitor + AphidicolinATR+/-///ChIP-seq (anti-RPA)
GSM2693333-ATRi-plus-APH_18h_Input_for_rep1and2MEFMus musculusATR-45 inhibitor + AphidicolinATR+/-///ChIP-seq (Input)
GSM2693334-ATRi-plus-APH_18h_Input_for_rep3MEFMus musculusATR-45 inhibitor + AphidicolinATR+/-///ChIP-seq (Input)
GSM2693335-ATRi-plus-APH_9h_RPAChIPSeq_rep1MEFMus musculusATR-45 inhibitor + AphidicolinATR+/-///ChIP-seq (anti-RPA)
GSM2693336-ATRi-plus-APH_9h_RPAChIPSeq_rep2MEFMus musculusATR-45 inhibitor + AphidicolinATR+/-///ChIP-seq (anti-RPA)
GSM2693337-ATRi-plus-APH_9h_InputMEFMus musculusATR-45 inhibitor + AphidicolinATR+/-///ChIP-seq (Input)
GSM2693338-ATRi_18h_RPAChIPSeq_rep1MEFMus musculusATR-45 inhibitorATR+/-///ChIP-seq (anti-RPA)
GSM2693339-ATRi_18h_Input_for_rep1MEFMus musculusATR-45 inhibitorATR+/-///ChIP-seq (Input)
GSM2693340-APH_18h_RPAChIPSeq_rep1MEFMus musculusAphidicolinATR+/-///ChIP-seq (anti-RPA)
GSM2693341-APH_18h_RPAChIPSeq_rep2MEFMus musculusAphidicolinATR+/-///ChIP-seq (anti-RPA)
GSM2693342-APH_18h_InputMEFMus musculusAphidicolinATR+/-///ChIP-seq (Input)
GSM2693343-ATRi-plus-shTIM_18h_RPAChIPSeq_rep1MEFMus musculusATR-45 inhibitorATR+/- shTIM///ChIP-seq (anti-RPA)
GSM2693344-ATRi-plus-shTIM_18h_RPAChIPSeq_rep2MEFMus musculusATR-45 inhibitorATR+/- shTIM///ChIP-seq (anti-RPA)
GSM2693345-ATRi-plus-shTIM_18h_InputMEFMus musculusATR-45 inhibitorATR+/- shTIM///ChIP-seq (Input)
GSM2876119-ATRi_18h_RPAChIPSeq_rep2MEFMus musculusATR-45 inhibitorATR+/-///ChIP-seq (anti-RPA)
GSM2876120-ATRi_18h_Input_for_rep2MEFMus musculusATR-45 inhibitorATR+/-///ChIP-seq (Input)
GSM3185283-MDA-MB-231_DMSO_9h_BrITL_rep1MDA-MB-231Homo sapiensDMSO////BrITL
GSM3185284-MDA-MB-231_DMSO_9h_BrITL_rep2MDA-MB-231Homo sapiensDMSO////BrITL
GSM3185285-MDA-MB-231_DMSO_9h_InputMDA-MB-231Homo sapiensDMSO////BrITL
GSM3185286-MDA-MB-231_ATRi-plus-APH_9h_BrITL_rep1MDA-MB-231Homo sapiensVE-822 + Aphidicolin////BrITL
GSM3185287-MDA-MB-231_ATRi-plus-APH_9h_BrITL_rep2MDA-MB-231Homo sapiensVE-822 + Aphidicolin////BrITL
GSM3185288-MDA-MB-231_ATRi-plus-APH_9h_InputMDA-MB-231Homo sapiensVE-822 + Aphidicolin////BrITL
GSM3185289-MEFs_DMSO_18h_BrITL_rep1MEFMus musculusDMSOATR+/- Bcl-xL-expressing///BrITL
GSM3185290-MEFs_DMSO_18h_BrITL_rep2MEFMus musculusDMSOATR+/- Bcl-xL-expressing///BrITL
GSM3185291-MEFs_DMSO_18h_InputMEFMus musculusDMSOATR+/- Bcl-xL-expressing///BrITL
GSM3185292-MEFs_ATRi-plus-APH_18h_BrITL_rep1MEFMus musculusATR-45 inhibitor + AphidicolinATR+/- Bcl-xL-expressing///BrITL
GSM3185293-MEFs_ATRi-plus-APH_18h_BrITL_rep2MEFMus musculusATR-45 inhibitor + AphidicolinATR+/- Bcl-xL-expressing///BrITL
GSM3185294-MEFs_ATRi-plus-APH_18h_InputMEFMus musculusATR-45 inhibitor + AphidicolinATR+/- Bcl-xL-expressing///BrITL


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